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(-) Description

Title :  THE FK1 DOMAIN OF FKBP51 IN COMPLEX WITH (1S,5S,6R)-10-[(3,5-DICHLOROPHENYL)SULFONYL]-5-[(1R)-1,2-DIHYDROXYETHYL]-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-3,10-DIAZABICYCLO[4.3.1]DECAN-2-ONE
 
Authors :  S. Pomplun, Y. Wang, K. Kirschner, C. Kozany, A. Bracher, F. Hausch
Date :  27 Aug 14  (Deposition) - 03 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.27
Chains :  Asym. Unit :  A,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  E  (1x)
Keywords :  Fk-506 Binding Domain, Hsp90 Cochaperone, Immunophiline, Peptidyl- Prolyl Isomerase, Ligand Selectivity, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Pomplun, Y. Wang, A. Kirschner, C. Kozany, A. Bracher, F. Hausch
Rational Design And Asymmetric Synthesis Of Potent And Neurotrophic Ligands For Fk506-Binding Proteins (Fkbps).
Angew. Chem. Int. Ed. Engl. V. 54 345 2015
PubMed-ID: 25412894  |  Reference-DOI: 10.1002/ANIE.201408776
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP5
    Chains: A, E
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: CODON+ RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FK1 DOMAIN, UNP RESIDUES 16-140
    Gene: FKBP5, AIG6, FKBP51
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PPIASE FKBP5,51 KDA FK506-BINDING PROTEIN,FKBP-51,54 KDA PROGESTERONE RECEPTOR-ASSOCIATED IMMUNOPHILIN,ANDROGEN-REGULATED PROTEIN 6,FF1 ANTIGEN,FK506-BINDING PROTEIN 5,FKBP-5,FKBP54,P54, HSP90-BINDING IMMUNOPHILIN,ROTAMASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AE
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
13JQ2Ligand/Ion(1S,5S,6R)-10-[(3,5-DICHLOROPHENYL)SULFONYL]-5-[(1R)-1,2-DIHYDROXYETHYL]-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-3,10-DIAZABICYCLO[4.3.1]DECAN-2-ONE
2ACT2Ligand/IonACETATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13JQ1Ligand/Ion(1S,5S,6R)-10-[(3,5-DICHLOROPHENYL)SULFONYL]-5-[(1R)-1,2-DIHYDROXYETHYL]-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-3,10-DIAZABICYCLO[4.3.1]DECAN-2-ONE
2ACT-1Ligand/IonACETATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
13JQ1Ligand/Ion(1S,5S,6R)-10-[(3,5-DICHLOROPHENYL)SULFONYL]-5-[(1R)-1,2-DIHYDROXYETHYL]-3-[2-(3,4-DIMETHOXYPHENOXY)ETHYL]-3,10-DIAZABICYCLO[4.3.1]DECAN-2-ONE
2ACT2Ligand/IonACETATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:57 , PHE A:67 , ASP A:68 , PHE A:77 , GLY A:84 , GLN A:85 , VAL A:86 , ILE A:87 , TRP A:90 , ALA A:112 , TYR A:113 , SER A:118 , PHE A:130 , HOH A:411 , HOH A:414 , HOH A:419 , 3JQ E:201 , HOH E:411binding site for residue 3JQ A 201
2AC2SOFTWARE3JQ A:201 , TYR E:57 , PHE E:67 , ASP E:68 , PHE E:77 , GLY E:84 , GLN E:85 , VAL E:86 , ILE E:87 , TRP E:90 , ALA E:112 , TYR E:113 , SER E:118 , PHE E:130 , HOH E:376 , HOH E:387 , HOH E:399 , HOH E:430binding site for residue 3JQ E 201
3AC3SOFTWAREGLY E:13 , ALA E:14 , PRO E:15 , MET E:48 , ASP E:51 , LYS E:60 , HOH E:357binding site for residue ACT E 202
4AC4SOFTWAREHIS A:56 , HOH A:319 , HOH A:325 , HOH A:335 , SER E:62 , ASN E:63binding site for residue ACT E 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W9O)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:119 -Pro A:120
2Leu E:119 -Pro E:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W9O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W9O)

(-) Exons   (0, 0)

(no "Exon" information available for 4W9O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eee........eeeeeee............eeeeeeeee.....eeee.hhhh..eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w9o A  17 TVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 139
                                    26        36        46        56        66        76        86        96       106       116       126       136   


Chain E from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhee........eeeeeee............eeeeeeeeee....eeee.hhhh..eeee......hhhhhhhhh......eeeeee.hhhh...............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w9o E  13 GAPATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 139
                                    22        32        42        52        62        72        82        92       102       112       122       132
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W9O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W9O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W9O)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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    Leu A:119 - Pro A:120   [ RasMol ]  
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  FKBP5_HUMAN | Q13451
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKBP5_HUMAN | Q13451: 1kt0 3o5d 3o5e 3o5f 3o5g 3o5i 3o5j 3o5k 3o5l 3o5m 3o5o 3o5p 3o5q 3o5r 4drh 4dri 4drk 4drm 4drn 4dro 4drp 4drq 4jfi 4jfj 4jfk 4jfl 4jfm 4r0x 4tw6 4tw7 4tx0 4w9p 4w9q 5bxj 5dit 5diu 5div

(-) Related Entries Specified in the PDB File

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