Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH ZINC
 
Authors :  T. J. Smith, M. Li
Date :  04 May 10  (Deposition) - 04 May 11  (Release) - 31 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.94
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Bovine Glutamate Dehydrogenase, Inhibition, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Bailey, L. Powell, L. Sinanan, J. Neal, M. Li, T. Smith, E. Bell
A Novel Mechanism Of V-Type Zinc Inhibition Of Glutamate Dehydrogenase Results From Disruption Of Subunit Interactions Necessary For Efficient Catalysis.
Febs J. V. 278 3140 2011
PubMed-ID: 21749647  |  Reference-DOI: 10.1111/J.1742-4658.2011.08240.X

(-) Compounds

Molecule 1 - GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL
    Chains: A, B, C, D, E, F
    EC Number: 1.4.1.3
    Fragment: GLUTAMATE DEHYDROGENASE, RESIDUES 58-558
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: LIVER
    Synonym: GDH 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 30)

Asymmetric/Biological Unit (4, 30)
No.NameCountTypeFull Name
1GLU6Mod. Amino AcidGLUTAMIC ACID
2GTP6Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
3NDP6Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4ZN12Ligand/IonZINC ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:90 , GLY A:91 , GLY A:92 , MET A:111 , LYS A:114 , LYS A:126 , ALA A:166 , PRO A:167 , ASP A:168 , ARG A:211 , ASN A:349 , VAL A:378 , SER A:381 , NDP A:552BINDING SITE FOR RESIDUE GLU A 502
02AC2SOFTWARELYS B:90 , GLY B:91 , MET B:111 , LYS B:114 , LYS B:126 , ALA B:166 , PRO B:167 , ASP B:168 , ARG B:211 , ASN B:349 , VAL B:378 , SER B:381 , NDP B:552BINDING SITE FOR RESIDUE GLU B 502
03AC3SOFTWARELYS C:90 , GLY C:92 , MET C:111 , LYS C:114 , LYS C:126 , ALA C:166 , PRO C:167 , ASP C:168 , THR C:199 , ARG C:211 , ASN C:349 , VAL C:378 , SER C:381 , NDP C:552BINDING SITE FOR RESIDUE GLU C 502
04AC4SOFTWARELYS D:90 , GLY D:91 , GLY D:92 , MET D:111 , LYS D:114 , LYS D:126 , ALA D:166 , PRO D:167 , ASP D:168 , THR D:199 , ARG D:211 , ASN D:349 , VAL D:378 , SER D:381 , NDP D:552BINDING SITE FOR RESIDUE GLU D 502
05AC5SOFTWARELYS E:90 , GLY E:92 , MET E:111 , LYS E:114 , LYS E:126 , ALA E:166 , PRO E:167 , ASP E:168 , ARG E:211 , ASN E:349 , VAL E:378 , SER E:381 , NDP E:552BINDING SITE FOR RESIDUE GLU E 502
06AC6SOFTWARELYS F:90 , MET F:111 , LYS F:114 , LYS F:126 , ALA F:166 , PRO F:167 , ASP F:168 , THR F:199 , ARG F:211 , ASN F:349 , VAL F:378 , SER F:381 , NDP F:552BINDING SITE FOR RESIDUE GLU F 502
07AC7SOFTWAREARG A:94 , LYS A:134 , ASP A:168 , MET A:169 , SER A:170 , ARG A:211 , THR A:215 , GLY A:251 , PHE A:252 , GLY A:253 , ASN A:254 , VAL A:255 , GLU A:275 , SER A:276 , ALA A:325 , ALA A:326 , GLY A:347 , ALA A:348 , ASN A:349 , ASN A:374 , GLU A:502BINDING SITE FOR RESIDUE NDP A 552
08AC8SOFTWAREARG B:94 , ASP B:168 , MET B:169 , SER B:170 , ARG B:211 , THR B:215 , GLY B:251 , PHE B:252 , GLY B:253 , ASN B:254 , VAL B:255 , GLU B:275 , SER B:276 , ALA B:325 , ALA B:326 , GLN B:330 , ALA B:348 , ASN B:349 , ASN B:374 , GLU B:502BINDING SITE FOR RESIDUE NDP B 552
09AC9SOFTWAREARG F:94 , LYS F:134 , ASP F:168 , MET F:169 , SER F:170 , ARG F:211 , THR F:215 , GLN F:250 , GLY F:251 , PHE F:252 , GLY F:253 , ASN F:254 , VAL F:255 , GLU F:275 , SER F:276 , ALA F:325 , ALA F:326 , GLN F:330 , GLY F:347 , ALA F:348 , ASN F:349 , ASN F:374 , GLU F:502BINDING SITE FOR RESIDUE NDP F 552
10BC1SOFTWAREALA D:1 , ARG D:94 , ASP D:168 , MET D:169 , SER D:170 , ARG D:211 , THR D:215 , GLN D:250 , GLY D:251 , PHE D:252 , GLY D:253 , ASN D:254 , VAL D:255 , GLU D:275 , SER D:276 , ALA D:325 , ALA D:326 , GLN D:330 , GLY D:347 , ALA D:348 , ASN D:349 , ASN D:374 , GLU D:502BINDING SITE FOR RESIDUE NDP D 552
11BC2SOFTWAREARG E:94 , ASP E:168 , MET E:169 , SER E:170 , ARG E:211 , THR E:215 , GLY E:251 , PHE E:252 , GLY E:253 , ASN E:254 , VAL E:255 , GLU E:275 , SER E:276 , ALA E:325 , ALA E:326 , SER E:327 , GLN E:330 , GLY E:347 , ASN E:349 , ASN E:374 , GLU E:502BINDING SITE FOR RESIDUE NDP E 552
12BC3SOFTWAREARG C:94 , LYS C:134 , ASP C:168 , MET C:169 , SER C:170 , ARG C:211 , THR C:215 , GLN C:250 , GLY C:251 , GLY C:253 , ASN C:254 , VAL C:255 , GLU C:275 , SER C:276 , ALA C:325 , ALA C:326 , SER C:327 , GLN C:330 , GLY C:347 , ALA C:348 , ASN C:349 , ASN C:374 , GLU C:502BINDING SITE FOR RESIDUE NDP C 552
13BC4SOFTWAREHIS A:209 , GLY A:210 , SER A:213 , HIS A:258 , ARG A:261 , TYR A:262 , ARG A:265 , LYS A:289 , GLU A:292 , LYS A:446 , HIS A:450 , ZN A:505BINDING SITE FOR RESIDUE GTP A 503
14BC5SOFTWAREHIS B:209 , GLY B:210 , SER B:213 , ARG B:217 , HIS B:258 , ARG B:261 , TYR B:262 , ARG B:265 , LYS B:289 , GLU B:292 , LYS B:446 , HIS B:450 , ZN B:505BINDING SITE FOR RESIDUE GTP B 503
15BC6SOFTWAREHIS F:209 , GLY F:210 , SER F:213 , ARG F:217 , LEU F:257 , HIS F:258 , ARG F:261 , TYR F:262 , ARG F:265 , LYS F:289 , GLU F:292 , LYS F:446 , HIS F:450 , ZN F:504BINDING SITE FOR RESIDUE GTP F 503
16BC7SOFTWAREHIS D:209 , GLY D:210 , SER D:213 , ARG D:217 , LEU D:257 , HIS D:258 , ARG D:261 , TYR D:262 , ARG D:265 , LYS D:289 , GLU D:292 , LYS D:446 , HIS D:450 , ZN D:505BINDING SITE FOR RESIDUE GTP D 503
17BC8SOFTWAREHIS E:209 , GLY E:210 , SER E:213 , ARG E:217 , HIS E:258 , ARG E:261 , TYR E:262 , ARG E:265 , LYS E:289 , GLU E:292 , LYS E:446 , HIS E:450 , ZN E:505BINDING SITE FOR RESIDUE GTP E 503
18BC9SOFTWAREHIS C:209 , GLY C:210 , SER C:213 , ARG C:217 , HIS C:258 , ARG C:261 , TYR C:262 , ARG C:265 , LYS C:289 , GLU C:292 , LYS C:446 , HIS C:450 , ZN C:506BINDING SITE FOR RESIDUE GTP C 503
19CC1SOFTWAREGLU C:151 , LYS C:154 , HIS F:57BINDING SITE FOR RESIDUE ZN C 504
20CC2SOFTWAREHIS B:57 , GLU E:151BINDING SITE FOR RESIDUE ZN E 504
21CC3SOFTWAREHIS A:57 , GLN A:84 , GLU D:151BINDING SITE FOR RESIDUE ZN D 504
22CC4SOFTWAREHIS C:57 , GLU F:151BINDING SITE FOR RESIDUE ZN C 505
23CC5SOFTWAREGLU B:151 , HIS E:57BINDING SITE FOR RESIDUE ZN B 504
24CC6SOFTWAREGLU A:151 , HIS D:57BINDING SITE FOR RESIDUE ZN A 504
25CC7SOFTWAREHIS F:209 , HIS F:450 , GTP F:503BINDING SITE FOR RESIDUE ZN F 504
26CC8SOFTWAREHIS E:209 , HIS E:450 , GTP E:503BINDING SITE FOR RESIDUE ZN E 505
27CC9SOFTWAREHIS B:209 , HIS B:450 , GTP B:503BINDING SITE FOR RESIDUE ZN B 505
28DC1SOFTWAREHIS A:209 , HIS A:450 , GTP A:503BINDING SITE FOR RESIDUE ZN A 505
29DC2SOFTWAREHIS C:209 , HIS C:450 , GTP C:503BINDING SITE FOR RESIDUE ZN C 506
30DC3SOFTWAREHIS D:209 , HIS D:450 , GTP D:503BINDING SITE FOR RESIDUE ZN D 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MVQ)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Thr A:87 -Pro A:88
2Thr B:87 -Pro B:88
3Thr C:87 -Pro C:88
4Thr D:87 -Pro D:88
5Thr E:87 -Pro E:88
6Thr F:87 -Pro F:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MVQ)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLFV_DEHYDROGENASEPS00074 Glu / Leu / Phe / Val dehydrogenases active site.DHE3_BOVIN177-190
 
 
 
 
 		  6A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133

(-) Exons   (0, 0)

(no "Exon" information available for 3MVQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:501
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 558
               SCOP domains d3mvqa1 A:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqa2 A:209-495 Glutamate dehydrogenase                                                                                                                                                                                                                                                      ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......eeeeeeee...hhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhh..hhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....-----. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq A   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNE-----E 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490    |    -|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        495   502


Chain B from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:501
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 558
               SCOP domains d3mvqb1 B:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqb2 B:209-495 Glutamate dehydrogenase                                                                                                                                                                                                                                                      ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......eeeeeeee...hhhhhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh-----. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq B   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNE-----E 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490    |    -|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        495   502


Chain C from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:501
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 558
               SCOP domains d3mvqc1 C:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqc2 C:209-495 Glutamate dehydrogenase                                                                                                                                                                                                                                                      ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eeee...hhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.......ee.......hhhhhhhhhhhhhhh......hhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..................eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh-----. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq C   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNE-----E 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490    |    -|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        495   502


Chain D from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:501
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 558
               SCOP domains d3mvqd1 D:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqd2 D:209-495 Glutamate dehydrogenase                                                                                                                                                                                                                                                      ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......eeeeeeee...hhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhh.......hhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh-----. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq D   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNE-----E 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490    |    -|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        495   502


Chain E from PDB  Type:PROTEIN  Length:496
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:501
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 558
               SCOP domains d3mvqe1 E:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqe2 E:209-495 Glutamate dehydrogenase                                                                                                                                                                                                                                                      ------ SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eeee...hhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh......ee.......hhhhhhhhhhhhhhh......hhhhh....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..........hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh-----. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq E   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNE-----E 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490    |    -|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        495   502


Chain F from PDB  Type:PROTEIN  Length:502
 aligned with DHE3_BOVIN | P00366 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              558 
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557| 
           DHE3_BOVIN    58 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT-   -
               SCOP domains d3mvqf1 F:1-208 Glutamate dehydrogenase                                                                                                                                                                         d3mvqf2 F:209-501 Glutamate dehydrogenase                                                                                                                                                                                                                                                            - SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------ELFV_dehydrog_N-3mvqF07 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF01 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------ELFV_dehydrog_N-3mvqF08 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF02 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------ELFV_dehydrog_N-3mvqF09 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF03 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------ELFV_dehydrog_N-3mvqF10 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF04 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------ELFV_dehydrog_N-3mvqF11 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF05 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------ELFV_dehydrog_N-3mvqF12 F:55-187                                                                                                     ------------------ELFV_dehydrog-3mvqF06 F:206-420                                                                                                                                                                                        ---------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeeeeee.....eeeeeeeeee.......ee..eeee...hhhhhhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.......ee.......hhhhhhhhhhhhhh.......hhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeeeee..eeee.....hhhhhhhhhhhhh........eee..hhhhh...eeee..........hhhhh...eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------GLFV_DEHYDROGE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mvq F   1 ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFTE 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MVQ)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: ELFV_dehydrog_N] (13)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DHE3_BOVIN | P00366)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0004352    glutamate dehydrogenase (NAD+) activity    Catalysis of the reaction: L-glutamate + H2O + NAD+ = 2-oxoglutarate + NH3 + NADH + H+.
    GO:0004353    glutamate dehydrogenase [NAD(P)+] activity    Catalysis of the reaction: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006538    glutamate catabolic process    The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid.
    GO:0006541    glutamine metabolic process    The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0072350    tricarboxylic acid metabolic process    The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing three carboxyl (COOH) groups or anions (COO-).
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GLU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GTP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Thr A:87 - Pro A:88   [ RasMol ]  
    Thr B:87 - Pro B:88   [ RasMol ]  
    Thr C:87 - Pro C:88   [ RasMol ]  
    Thr D:87 - Pro D:88   [ RasMol ]  
    Thr E:87 - Pro E:88   [ RasMol ]  
    Thr F:87 - Pro F:88   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3mvq
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DHE3_BOVIN | P00366
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.4.1.3
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  DHE3_BOVIN | P00366
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHE3_BOVIN | P00366: 1hwy 1hwz 1nqt 1nr7 3etd 3ete 3etg 3jcz 3jd0 3jd1 3jd2 3jd3 3jd4 3mvo 3mw9 3qmu 5k12

(-) Related Entries Specified in the PDB File

1hwz BOVINE GDH COMPLEXED WITH NADPH, GTP, AND GLUTAMATE.
3mvo BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH EU3+.