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3MVQ
Asym. Unit
Info
Asym.Unit (492 KB)
Biol.Unit 1 (482 KB)
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(1)
Title
:
BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH ZINC
Authors
:
T. J. Smith, M. Li
Date
:
04 May 10 (Deposition) - 04 May 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Bovine Glutamate Dehydrogenase, Inhibition, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bailey, L. Powell, L. Sinanan, J. Neal, M. Li, T. Smith, E. Bell
A Novel Mechanism Of V-Type Zinc Inhibition Of Glutamate Dehydrogenase Results From Disruption Of Subunit Interactions Necessary For Efficient Catalysis.
Febs J. V. 278 3140 2011
[
close entry info
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: GLUTAMIC ACID (GLUa)
1b: GLUTAMIC ACID (GLUb)
1c: GLUTAMIC ACID (GLUc)
1d: GLUTAMIC ACID (GLUd)
1e: GLUTAMIC ACID (GLUe)
1f: GLUTAMIC ACID (GLUf)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
2e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
2f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
3d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
3e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
3f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
2
GTP
6
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
NDP
6
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:90 , GLY A:91 , GLY A:92 , MET A:111 , LYS A:114 , LYS A:126 , ALA A:166 , PRO A:167 , ASP A:168 , ARG A:211 , ASN A:349 , VAL A:378 , SER A:381 , NDP A:552
BINDING SITE FOR RESIDUE GLU A 502
02
AC2
SOFTWARE
LYS B:90 , GLY B:91 , MET B:111 , LYS B:114 , LYS B:126 , ALA B:166 , PRO B:167 , ASP B:168 , ARG B:211 , ASN B:349 , VAL B:378 , SER B:381 , NDP B:552
BINDING SITE FOR RESIDUE GLU B 502
03
AC3
SOFTWARE
LYS C:90 , GLY C:92 , MET C:111 , LYS C:114 , LYS C:126 , ALA C:166 , PRO C:167 , ASP C:168 , THR C:199 , ARG C:211 , ASN C:349 , VAL C:378 , SER C:381 , NDP C:552
BINDING SITE FOR RESIDUE GLU C 502
04
AC4
SOFTWARE
LYS D:90 , GLY D:91 , GLY D:92 , MET D:111 , LYS D:114 , LYS D:126 , ALA D:166 , PRO D:167 , ASP D:168 , THR D:199 , ARG D:211 , ASN D:349 , VAL D:378 , SER D:381 , NDP D:552
BINDING SITE FOR RESIDUE GLU D 502
05
AC5
SOFTWARE
LYS E:90 , GLY E:92 , MET E:111 , LYS E:114 , LYS E:126 , ALA E:166 , PRO E:167 , ASP E:168 , ARG E:211 , ASN E:349 , VAL E:378 , SER E:381 , NDP E:552
BINDING SITE FOR RESIDUE GLU E 502
06
AC6
SOFTWARE
LYS F:90 , MET F:111 , LYS F:114 , LYS F:126 , ALA F:166 , PRO F:167 , ASP F:168 , THR F:199 , ARG F:211 , ASN F:349 , VAL F:378 , SER F:381 , NDP F:552
BINDING SITE FOR RESIDUE GLU F 502
07
AC7
SOFTWARE
ARG A:94 , LYS A:134 , ASP A:168 , MET A:169 , SER A:170 , ARG A:211 , THR A:215 , GLY A:251 , PHE A:252 , GLY A:253 , ASN A:254 , VAL A:255 , GLU A:275 , SER A:276 , ALA A:325 , ALA A:326 , GLY A:347 , ALA A:348 , ASN A:349 , ASN A:374 , GLU A:502
BINDING SITE FOR RESIDUE NDP A 552
08
AC8
SOFTWARE
ARG B:94 , ASP B:168 , MET B:169 , SER B:170 , ARG B:211 , THR B:215 , GLY B:251 , PHE B:252 , GLY B:253 , ASN B:254 , VAL B:255 , GLU B:275 , SER B:276 , ALA B:325 , ALA B:326 , GLN B:330 , ALA B:348 , ASN B:349 , ASN B:374 , GLU B:502
BINDING SITE FOR RESIDUE NDP B 552
09
AC9
SOFTWARE
ARG F:94 , LYS F:134 , ASP F:168 , MET F:169 , SER F:170 , ARG F:211 , THR F:215 , GLN F:250 , GLY F:251 , PHE F:252 , GLY F:253 , ASN F:254 , VAL F:255 , GLU F:275 , SER F:276 , ALA F:325 , ALA F:326 , GLN F:330 , GLY F:347 , ALA F:348 , ASN F:349 , ASN F:374 , GLU F:502
BINDING SITE FOR RESIDUE NDP F 552
10
BC1
SOFTWARE
ALA D:1 , ARG D:94 , ASP D:168 , MET D:169 , SER D:170 , ARG D:211 , THR D:215 , GLN D:250 , GLY D:251 , PHE D:252 , GLY D:253 , ASN D:254 , VAL D:255 , GLU D:275 , SER D:276 , ALA D:325 , ALA D:326 , GLN D:330 , GLY D:347 , ALA D:348 , ASN D:349 , ASN D:374 , GLU D:502
BINDING SITE FOR RESIDUE NDP D 552
11
BC2
SOFTWARE
ARG E:94 , ASP E:168 , MET E:169 , SER E:170 , ARG E:211 , THR E:215 , GLY E:251 , PHE E:252 , GLY E:253 , ASN E:254 , VAL E:255 , GLU E:275 , SER E:276 , ALA E:325 , ALA E:326 , SER E:327 , GLN E:330 , GLY E:347 , ASN E:349 , ASN E:374 , GLU E:502
BINDING SITE FOR RESIDUE NDP E 552
12
BC3
SOFTWARE
ARG C:94 , LYS C:134 , ASP C:168 , MET C:169 , SER C:170 , ARG C:211 , THR C:215 , GLN C:250 , GLY C:251 , GLY C:253 , ASN C:254 , VAL C:255 , GLU C:275 , SER C:276 , ALA C:325 , ALA C:326 , SER C:327 , GLN C:330 , GLY C:347 , ALA C:348 , ASN C:349 , ASN C:374 , GLU C:502
BINDING SITE FOR RESIDUE NDP C 552
13
BC4
SOFTWARE
HIS A:209 , GLY A:210 , SER A:213 , HIS A:258 , ARG A:261 , TYR A:262 , ARG A:265 , LYS A:289 , GLU A:292 , LYS A:446 , HIS A:450 , ZN A:505
BINDING SITE FOR RESIDUE GTP A 503
14
BC5
SOFTWARE
HIS B:209 , GLY B:210 , SER B:213 , ARG B:217 , HIS B:258 , ARG B:261 , TYR B:262 , ARG B:265 , LYS B:289 , GLU B:292 , LYS B:446 , HIS B:450 , ZN B:505
BINDING SITE FOR RESIDUE GTP B 503
15
BC6
SOFTWARE
HIS F:209 , GLY F:210 , SER F:213 , ARG F:217 , LEU F:257 , HIS F:258 , ARG F:261 , TYR F:262 , ARG F:265 , LYS F:289 , GLU F:292 , LYS F:446 , HIS F:450 , ZN F:504
BINDING SITE FOR RESIDUE GTP F 503
16
BC7
SOFTWARE
HIS D:209 , GLY D:210 , SER D:213 , ARG D:217 , LEU D:257 , HIS D:258 , ARG D:261 , TYR D:262 , ARG D:265 , LYS D:289 , GLU D:292 , LYS D:446 , HIS D:450 , ZN D:505
BINDING SITE FOR RESIDUE GTP D 503
17
BC8
SOFTWARE
HIS E:209 , GLY E:210 , SER E:213 , ARG E:217 , HIS E:258 , ARG E:261 , TYR E:262 , ARG E:265 , LYS E:289 , GLU E:292 , LYS E:446 , HIS E:450 , ZN E:505
BINDING SITE FOR RESIDUE GTP E 503
18
BC9
SOFTWARE
HIS C:209 , GLY C:210 , SER C:213 , ARG C:217 , HIS C:258 , ARG C:261 , TYR C:262 , ARG C:265 , LYS C:289 , GLU C:292 , LYS C:446 , HIS C:450 , ZN C:506
BINDING SITE FOR RESIDUE GTP C 503
19
CC1
SOFTWARE
GLU C:151 , LYS C:154 , HIS F:57
BINDING SITE FOR RESIDUE ZN C 504
20
CC2
SOFTWARE
HIS B:57 , GLU E:151
BINDING SITE FOR RESIDUE ZN E 504
21
CC3
SOFTWARE
HIS A:57 , GLN A:84 , GLU D:151
BINDING SITE FOR RESIDUE ZN D 504
22
CC4
SOFTWARE
HIS C:57 , GLU F:151
BINDING SITE FOR RESIDUE ZN C 505
23
CC5
SOFTWARE
GLU B:151 , HIS E:57
BINDING SITE FOR RESIDUE ZN B 504
24
CC6
SOFTWARE
GLU A:151 , HIS D:57
BINDING SITE FOR RESIDUE ZN A 504
25
CC7
SOFTWARE
HIS F:209 , HIS F:450 , GTP F:503
BINDING SITE FOR RESIDUE ZN F 504
26
CC8
SOFTWARE
HIS E:209 , HIS E:450 , GTP E:503
BINDING SITE FOR RESIDUE ZN E 505
27
CC9
SOFTWARE
HIS B:209 , HIS B:450 , GTP B:503
BINDING SITE FOR RESIDUE ZN B 505
28
DC1
SOFTWARE
HIS A:209 , HIS A:450 , GTP A:503
BINDING SITE FOR RESIDUE ZN A 505
29
DC2
SOFTWARE
HIS C:209 , HIS C:450 , GTP C:503
BINDING SITE FOR RESIDUE ZN C 506
30
DC3
SOFTWARE
HIS D:209 , HIS D:450 , GTP D:503
BINDING SITE FOR RESIDUE ZN D 505
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: GLFV_DEHYDROGENASE (A:120-133,B:120-133,C:120-133,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_BOVIN
177-190
6
A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3mvqa1 (A:1-208)
1b: SCOP_d3mvqe1 (E:1-208)
1c: SCOP_d3mvqf1 (F:1-208)
1d: SCOP_d3mvqb1 (B:1-208)
1e: SCOP_d3mvqc1 (C:1-208)
1f: SCOP_d3mvqd1 (D:1-208)
2a: SCOP_d3mvqa2 (A:209-495)
2b: SCOP_d3mvqe2 (E:209-495)
2c: SCOP_d3mvqf2 (F:209-501)
2d: SCOP_d3mvqb2 (B:209-495)
2e: SCOP_d3mvqc2 (C:209-495)
2f: SCOP_d3mvqd2 (D:209-495)
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)
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Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
1a
d3mvqa1
A:1-208
1b
d3mvqe1
E:1-208
1c
d3mvqf1
F:1-208
1d
d3mvqb1
B:1-208
1e
d3mvqc1
C:1-208
1f
d3mvqd1
D:1-208
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
2a
d3mvqa2
A:209-495
2b
d3mvqe2
E:209-495
2c
d3mvqf2
F:209-501
2d
d3mvqb2
B:209-495
2e
d3mvqc2
C:209-495
2f
d3mvqd2
D:209-495
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ELFV_dehydrog_3mvqF01 (F:206-420)
1b: PFAM_ELFV_dehydrog_3mvqF02 (F:206-420)
1c: PFAM_ELFV_dehydrog_3mvqF03 (F:206-420)
1d: PFAM_ELFV_dehydrog_3mvqF04 (F:206-420)
1e: PFAM_ELFV_dehydrog_3mvqF05 (F:206-420)
1f: PFAM_ELFV_dehydrog_3mvqF06 (F:206-420)
2a: PFAM_ELFV_dehydrog_N_3mvqF07 (F:55-187)
2b: PFAM_ELFV_dehydrog_N_3mvqF08 (F:55-187)
2c: PFAM_ELFV_dehydrog_N_3mvqF09 (F:55-187)
2d: PFAM_ELFV_dehydrog_N_3mvqF10 (F:55-187)
2e: PFAM_ELFV_dehydrog_N_3mvqF11 (F:55-187)
2f: PFAM_ELFV_dehydrog_N_3mvqF12 (F:55-187)
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Clans
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Organisms
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
ELFV_dehydrog
(13)
Bos taurus (Bovine)
(5)
1a
ELFV_dehydrog-3mvqF01
F:206-420
1b
ELFV_dehydrog-3mvqF02
F:206-420
1c
ELFV_dehydrog-3mvqF03
F:206-420
1d
ELFV_dehydrog-3mvqF04
F:206-420
1e
ELFV_dehydrog-3mvqF05
F:206-420
1f
ELFV_dehydrog-3mvqF06
F:206-420
Clan
:
no clan defined [family: ELFV_dehydrog_N]
(13)
Family
:
ELFV_dehydrog_N
(13)
Bos taurus (Bovine)
(5)
2a
ELFV_dehydrog_N-3mvqF07
F:55-187
2b
ELFV_dehydrog_N-3mvqF08
F:55-187
2c
ELFV_dehydrog_N-3mvqF09
F:55-187
2d
ELFV_dehydrog_N-3mvqF10
F:55-187
2e
ELFV_dehydrog_N-3mvqF11
F:55-187
2f
ELFV_dehydrog_N-3mvqF12
F:55-187
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