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(-) Description

Title :  GLUTAMATE DEHYDROGENASE IN COMPLEX WITH NADH AND GTP, OPEN CONFORMATION
 
Authors :  M. J. Borgnia, S. Banerjee, A. Merk, D. Matthies, A. Bartesaghi, P. Rao, J. Pierson, L. A. Earl, V. Falconieri, S. Subramaniam, J. L. S. Milne
Date :  28 Mar 16  (Deposition) - 27 Apr 16  (Release) - 11 May 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Glutamate Metabolism, Mitochondria, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Borgnia, S. Banerjee, A. Merk, D. Matthies, A. Bartesaghi, P. Rao J. Pierson, L. A. Earl, V. Falconieri, S. Subramaniam, J. L. Milne
Using Cryo-Em To Map Small Ligands On Dynamic Metabolic Enzymes: Studies With Glutamate Dehydrogenase.
Mol. Pharmacol. V. 89 645 2016
PubMed-ID: 27036132  |  Reference-DOI: 10.1124/MOL.116.103382

(-) Compounds

Molecule 1 - GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL
    Chains: A, B, C, D, E, F
    EC Number: 1.4.1.3
    Fragment: UNP RESIDUES 58-558
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: GDH 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric/Biological Unit (2, 18)
No.NameCountTypeFull Name
1GTP6Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2NAI12Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:261 , TYR A:262 , GLU A:292 , LYS A:446 , HIS A:450BINDING SITE FOR RESIDUE GTP A 601
02AC2SOFTWAREMET A:169 , GLN A:250 , PHE A:252 , GLY A:253 , ASN A:254 , GLU A:275 , SER A:276 , ALA A:326 , GLN A:330 , ALA A:348BINDING SITE FOR RESIDUE NAI A 602
03AC3SOFTWAREHIS A:85 , ARG A:86 , CYS A:115 , ASP A:119 , VAL A:120 , PHE A:122 , ARG A:459 , GLN A:463 , SER B:204 , HIS B:209 , SER B:393 , SER B:444 , GLU B:445BINDING SITE FOR RESIDUE NAI A 603
04AC4SOFTWAREARG B:261 , TYR B:262 , GLU B:292 , LYS B:446 , HIS B:450BINDING SITE FOR RESIDUE GTP B 601
05AC5SOFTWAREMET B:169 , GLN B:250 , PHE B:252 , GLY B:253 , ASN B:254 , GLU B:275 , SER B:276 , ALA B:326 , GLN B:330 , ALA B:348BINDING SITE FOR RESIDUE NAI B 602
06AC6SOFTWAREHIS B:85 , ARG B:86 , CYS B:115 , ASP B:119 , VAL B:120 , PHE B:122 , ARG B:459 , GLN B:463 , SER C:204 , HIS C:209 , SER C:393 , SER C:444 , GLU C:445BINDING SITE FOR RESIDUE NAI B 603
07AC7SOFTWARESER A:204 , HIS A:209 , SER A:393 , SER A:444 , GLU A:445 , HIS C:85 , ARG C:86 , CYS C:115 , ASP C:119 , VAL C:120 , PHE C:122 , ARG C:459 , GLN C:463BINDING SITE FOR RESIDUE NAI C 601
08AC8SOFTWAREARG C:261 , TYR C:262 , GLU C:292 , LYS C:446 , HIS C:450BINDING SITE FOR RESIDUE GTP C 602
09AC9SOFTWAREMET C:169 , GLN C:250 , PHE C:252 , GLY C:253 , ASN C:254 , GLU C:275 , SER C:276 , ALA C:326 , GLN C:330 , ALA C:348BINDING SITE FOR RESIDUE NAI C 603
10BC1SOFTWAREARG D:261 , TYR D:262 , GLU D:292 , LYS D:446 , HIS D:450BINDING SITE FOR RESIDUE GTP D 601
11BC2SOFTWAREMET D:169 , GLN D:250 , PHE D:252 , GLY D:253 , ASN D:254 , GLU D:275 , SER D:276 , ALA D:326 , GLN D:330 , ALA D:348BINDING SITE FOR RESIDUE NAI D 602
12BC3SOFTWAREHIS D:85 , ARG D:86 , CYS D:115 , ASP D:119 , VAL D:120 , PHE D:122 , ARG D:459 , GLN D:463 , SER E:204 , HIS E:209 , SER E:393 , SER E:444 , GLU E:445BINDING SITE FOR RESIDUE NAI D 603
13BC4SOFTWAREARG E:261 , TYR E:262 , GLU E:292 , LYS E:446 , HIS E:450BINDING SITE FOR RESIDUE GTP E 601
14BC5SOFTWAREMET E:169 , GLN E:250 , PHE E:252 , GLY E:253 , ASN E:254 , GLU E:275 , SER E:276 , ALA E:326 , GLN E:330 , ALA E:348BINDING SITE FOR RESIDUE NAI E 602
15BC6SOFTWAREHIS E:85 , ARG E:86 , CYS E:115 , ASP E:119 , VAL E:120 , PHE E:122 , ARG E:459 , GLN E:463 , SER F:204 , HIS F:209 , SER F:393 , SER F:444 , GLU F:445BINDING SITE FOR RESIDUE NAI E 603
16BC7SOFTWARESER D:204 , HIS D:209 , SER D:393 , SER D:444 , GLU D:445 , HIS F:85 , ARG F:86 , CYS F:115 , ASP F:119 , VAL F:120 , PHE F:122 , ARG F:459 , GLN F:463BINDING SITE FOR RESIDUE NAI F 601
17BC8SOFTWAREARG F:261 , TYR F:262 , GLU F:292 , LYS F:446 , HIS F:450BINDING SITE FOR RESIDUE GTP F 602
18BC9SOFTWAREMET F:169 , GLN F:250 , PHE F:252 , GLY F:253 , ASN F:254 , GLU F:275 , SER F:276 , ALA F:326 , GLN F:330 , ALA F:348BINDING SITE FOR RESIDUE NAI F 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JD3)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Thr A:87 -Pro A:88
2Thr B:87 -Pro B:88
3Thr C:87 -Pro C:88
4Thr D:87 -Pro D:88
5Thr E:87 -Pro E:88
6Thr F:87 -Pro F:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JD3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JD3)

(-) Exons   (0, 0)

(no "Exon" information available for 3JD3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 A   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495      


Chain B from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 B   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495      


Chain C from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 C   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495      


Chain D from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 D   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495      


Chain E from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 E   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495      


Chain F from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...eeeee...ee.....ee...eeeeeeehhhh.eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..hhhhh.hhhhh....hhhhh......hhhhhhhhhhhh....hhhhhh......hhhh.ee.......hhhhhhhhhhh...ee.eeee..eeee.....hhhhhhhhhhhh..............hhhhh.................hhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd3 F   6 DPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 501
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JD3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JD3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JD3)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  DHE3_BOVIN | P00366
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHE3_BOVIN | P00366: 1hwy 1hwz 1nqt 1nr7 3etd 3ete 3etg 3jcz 3jd0 3jd1 3jd2 3jd4 3mvo 3mvq 3mw9 3qmu 5k12

(-) Related Entries Specified in the PDB File

3jcz 3jd0 3jd1 3jd2 3jd4