3HCR - JenaLib

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:196 , ARG A:272 , CYS A:403 , CYS A:406 , CYS A:411	BINDING SITE FOR RESIDUE FES A 501
02	AC2	SOFTWARE	HIS A:263 , SER A:264 , GLN A:302 , SER A:303 , TRP A:310 , FDE A:426	BINDING SITE FOR RESIDUE IMD A 2
03	AC3	SOFTWARE	CHD A:4 , LEU A:101 , ARG A:114 , ARG A:115 , PRO A:266 , SER A:268 , FDE A:426 , HOH A:441	BINDING SITE FOR RESIDUE CHD A 424
04	AC4	SOFTWARE	LEU A:101 , PRO A:102 , CHD A:424 , LYS B:606 , PHE B:610	BINDING SITE FOR RESIDUE CHD A 4
05	AC5	SOFTWARE	SER A:197 , FDE A:426 , HOH A:527	BINDING SITE FOR RESIDUE OXY A 425
06	AC6	SOFTWARE	ARG A:327 , SER B:902	BINDING SITE FOR RESIDUE CL A 1
07	AC7	SOFTWARE	IMD A:2 , HOH A:44 , MET A:76 , ARG A:115 , ILE A:119 , TYR A:123 , SER A:197 , THR A:198 , HIS A:263 , LEU A:265 , TYR A:276 , HIS A:341 , ILE A:342 , CHD A:424 , OXY A:425 , HOH A:440 , HOH A:454	BINDING SITE FOR RESIDUE FDE A 426
08	AC8	SOFTWARE	ARG A:115 , LYS A:118 , GLY A:306	BINDING SITE FOR RESIDUE SO4 A 427
09	AC9	SOFTWARE	CYS B:696 , ARG B:772 , SER B:902 , CYS B:903 , CYS B:906 , CYS B:911	BINDING SITE FOR RESIDUE FES B 502
10	BC1	SOFTWARE	SER B:764 , SER B:803 , TRP B:810 , FDE B:927	BINDING SITE FOR RESIDUE IMD B 1
11	BC2	SOFTWARE	CHD B:3 , HOH B:245 , LEU B:601 , ARG B:615 , PRO B:766 , SER B:768 , FDE B:927	BINDING SITE FOR RESIDUE CHD B 924
12	BC3	SOFTWARE	LEU A:107 , LEU B:601 , CHD B:924	BINDING SITE FOR RESIDUE CHD B 3
13	BC4	SOFTWARE	HOH A:55 , PRO A:277 , SER A:281 , HOH B:74 , PRO B:777 , SER B:781 , TRP B:801	BINDING SITE FOR RESIDUE GOL B 925
14	BC5	SOFTWARE	FDE B:927	BINDING SITE FOR RESIDUE OXY B 926
15	BC6	SOFTWARE	IMD B:1 , HOH B:17 , HOH B:109 , HOH B:142 , HOH B:274 , MET B:576 , PHE B:593 , ARG B:615 , ILE B:619 , SER B:697 , THR B:698 , HIS B:763 , LEU B:765 , TYR B:776 , VAL B:805 , PHE B:837 , HIS B:841 , ILE B:842 , CHD B:924 , OXY B:926	BINDING SITE FOR RESIDUE FDE B 927
16	BC7	SOFTWARE	ARG B:615 , LYS B:618 , GLY B:806	BINDING SITE FOR RESIDUE SO4 B 2

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (22, 44)

Asymmetric/Biological Unit (22, 44)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_030554	I	71	K	HEMH_HUMAN	Disease (EPP)	---	A B	I	71 571	K
02	UniProt	VAR_012028	R	96	Q	HEMH_HUMAN	Polymorphism	1041951	A B	R	96 596	Q
03	UniProt	VAR_030555	Q	139	L	HEMH_HUMAN	Disease (EPP)	---	A B	Q	139 639	L
04	UniProt	VAR_030556	S	151	P	HEMH_HUMAN	Disease (EPP)	---	A B	S	151 651	P
05	UniProt	VAR_030557	E	178	K	HEMH_HUMAN	Disease (EPP)	---	A B	E	178 678	K
06	UniProt	VAR_030558	L	182	R	HEMH_HUMAN	Disease (EPP)	---	A B	L	182 682	R
07	UniProt	VAR_002384	I	186	T	HEMH_HUMAN	Disease (EPP)	---	A B	I	186 686	T
08	UniProt	VAR_030559	Y	191	H	HEMH_HUMAN	Disease (EPP)	---	A B	Y	191 691	H
09	UniProt	VAR_030560	P	192	T	HEMH_HUMAN	Disease (EPP)	---	A B	P	192 692	T
10	UniProt	VAR_030561	C	236	Y	HEMH_HUMAN	Disease (EPP)	761962617	A B	C	236 736	Y
11	UniProt	VAR_030562	F	260	L	HEMH_HUMAN	Disease (EPP)	---	A B	F	260 760	L
12	UniProt	VAR_054629	S	264	L	HEMH_HUMAN	Disease (EPP)	---	A B	S	264 764	L
13	UniProt	VAR_002385	M	267	I	HEMH_HUMAN	Disease (EPP)	118204037	A B	M	267 767	I
14	UniProt	VAR_030563	T	283	I	HEMH_HUMAN	Disease (EPP)	---	A B	T	283 783	I
15	UniProt	VAR_030564	M	288	K	HEMH_HUMAN	Disease (EPP)	---	A B	M	288 788	K
16	UniProt	VAR_030565	P	334	L	HEMH_HUMAN	Disease (EPP)	150146721	A B	P	334 834	L
17	UniProt	VAR_030566	V	362	G	HEMH_HUMAN	Disease (EPP)	118204040	A B	V	362 862	G
18	UniProt	VAR_030567	K	379	N	HEMH_HUMAN	Disease (EPP)	---	A B	K	379 879	N
19	UniProt	VAR_002386	H	386	P	HEMH_HUMAN	Disease (EPP)	---	A B	H	386 886	P
20	UniProt	VAR_030568	C	406	S	HEMH_HUMAN	Disease (EPP)	---	A B	C	406 906	S
21	UniProt	VAR_030569	C	406	Y	HEMH_HUMAN	Disease (EPP)	---	A B	C	406 906	Y
22	UniProt	VAR_002387	F	417	S	HEMH_HUMAN	Disease (EPP)	118204039	A B	F	417 917	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (10, 20)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d3hcra_ A: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 3hcrA01 A:65-227,A:371-423  [code=3.40.50.1400, no name defined]                                                                                                   3hcrA02 A:228-370  [code=3.40.50.1400, no name defined]                                                                                        3hcrA01 A:65-227,A:371-423                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhhhhhhh.....hhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhh....eeeeee..............hhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: A:105-155 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: A:200-235            Exon 1.7  PDB: A:236-268         Exon 1.8  PDB: A:269-304            Exon 1.9  PDB: A:305-359 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: A:380-423 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: A:65-105 UniProt: 65-105  -------------------------------------------------Exon 1.5  PDB: A:155-200 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3hcr A  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414

Chain B from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d3hcrb_ B: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 3hcrB01 B:565-727,B:871-923  [code=3.40.50.1400, no name defined]                                                                                                  3hcrB02 B:728-870  [code=3.40.50.1400, no name defined]                                                                                        3hcrB01 B:565-727,B:871-923                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhh.....hhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhh....eeeeee.........hhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ------K------------------------Q------------------------------------------L-----------P--------------------------K---R---T----HT-------------------------------------------Y-----------------------L---L--I---------------I----K---------------------------------------------L---------------------------G----------------N------P-------------------S----------S------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y----------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: B:605-655 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: B:700-735            Exon 1.7  PDB: B:736-768         Exon 1.8  PDB: B:769-804            Exon 1.9  PDB: B:805-859 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: B:880-923 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: B:565-605 UniProt: 65-105 -------------------------------------------------Exon 1.5  PDB: B:655-700 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3hcr B 565 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 923
                                   574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (HEMH_HUMAN | P22830)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0004325	ferrochelatase activity	Catalysis of the reaction: protoheme = Fe(2+) + protoporphyrin IX.
	GO:0008198	ferrous iron binding	Interacting selectively and non-covalently with ferrous iron, Fe(II).
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0071549	cellular response to dexamethasone stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus.
	GO:0006091	generation of precursor metabolites and energy	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
	GO:0006783	heme biosynthetic process	The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
	GO:0006779	porphyrin-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
	GO:0046501	protoporphyrinogen IX metabolic process	The chemical reactions and pathways involving protoporphyrinogen IX, the specific substrate for the enzyme ferrochelatase, which catalyzes the insertion of iron to form protoheme. It is probably also the substrate for chlorophyll formation.
	GO:0046685	response to arsenic-containing substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0045471	response to ethanol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
	GO:0017085	response to insecticide	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insecticide stimulus. Insecticides are chemicals used to kill insects.
	GO:0010288	response to lead ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.
	GO:0009416	response to light stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
	GO:0010038	response to metal ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
	GO:0051597	response to methylmercury	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus.
	GO:0070541	response to platinum ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platinum stimulus.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	Cis Peptide Bonds
		Ala A:155 - Pro A:156	[ RasMol ]
		Ala B:655 - Pro B:656	[ RasMol ]
		Gly A:312 - Pro A:313	[ RasMol ]
		Gly B:812 - Pro B:813	[ RasMol ]
		His A:167 - Pro A:168	[ RasMol ]
		His B:667 - Pro B:668	[ RasMol ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (22, 44)

PROSITE Motifs (1, 2)

Exons (10, 20)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (25, 25)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File