3GQQ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE HUMAN RETINAL PROTEIN 4 (UNC-119 HOMOLOG A). NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR3066A

Authors :   S. M. Vorobiev, Y. Chen, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, S. Sahdev, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   24 Mar 09 (Deposition) - 07 Apr 09 (Release) - 07 Apr 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Human Retinal Protein 4, Unc-119 Homolog A, Hrg4, U119A_human, Hr3066A, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Alternative Splicing, Phosphoprotein, Sensory Transduction, Vision (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Vorobiev, Y. Chen, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, S. Sahdev, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Human Retinal Protein 4 (Unc-119 Homolog A).
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PROTEIN UNC-119 HOMOLOG A
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET14-15C
	Expression System Strain	:	BL21(DE3)+MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 56-240
	Gene	:	RG4, UNC119
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RETINAL PROTEIN 4, HRG4

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 54)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	30	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	6	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	4	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	4	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 4 (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	6	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 5 (2, 10)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	6	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 6 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	UNL	4	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	UNL A:402	BINDING SITE FOR RESIDUE UNL A 401
02	AC2	SOFTWARE	VAL A:143 , UNL A:401	BINDING SITE FOR RESIDUE UNL A 402
03	AC3	SOFTWARE	UNL A:404 , UNL A:405 , UNL A:406	BINDING SITE FOR RESIDUE UNL A 403
04	AC4	SOFTWARE	UNL A:403 , UNL A:405	BINDING SITE FOR RESIDUE UNL A 404
05	AC5	SOFTWARE	UNL A:403 , UNL A:404	BINDING SITE FOR RESIDUE UNL A 405
06	AC6	SOFTWARE	HIS A:165 , THR A:214 , TYR A:234 , TYR A:236 , UNL A:403	BINDING SITE FOR RESIDUE UNL A 406
07	AC7	SOFTWARE	UNL B:411	BINDING SITE FOR RESIDUE UNL B 410
08	AC8	SOFTWARE	HIS B:165 , UNL B:410 , UNL B:412	BINDING SITE FOR RESIDUE UNL B 411
09	AC9	SOFTWARE	UNL B:411 , UNL B:413 , HOH B:505	BINDING SITE FOR RESIDUE UNL B 412
10	BC1	SOFTWARE	ILE B:93 , UNL B:412	BINDING SITE FOR RESIDUE UNL B 413
11	BC2	SOFTWARE	ILE C:93 , UNL C:422	BINDING SITE FOR RESIDUE UNL C 421
12	BC3	SOFTWARE	UNL C:421	BINDING SITE FOR RESIDUE UNL C 422
13	BC4	SOFTWARE	HIS C:165 , THR C:214 , TYR C:236	BINDING SITE FOR RESIDUE UNL C 424
14	BC5	SOFTWARE	UNL D:432 , UNL D:433 , UNL D:434	BINDING SITE FOR RESIDUE UNL D 431
15	BC6	SOFTWARE	TYR D:234 , UNL D:431	BINDING SITE FOR RESIDUE UNL D 432
16	BC7	SOFTWARE	UNL D:431 , UNL D:434	BINDING SITE FOR RESIDUE UNL D 433
17	BC8	SOFTWARE	UNL D:431 , UNL D:433	BINDING SITE FOR RESIDUE UNL D 434
18	BC9	SOFTWARE	UNL D:436	BINDING SITE FOR RESIDUE UNL D 435
19	CC1	SOFTWARE	UNL D:435	BINDING SITE FOR RESIDUE UNL D 436
20	CC2	SOFTWARE	UNL E:442	BINDING SITE FOR RESIDUE UNL E 441
21	CC3	SOFTWARE	UNL E:441	BINDING SITE FOR RESIDUE UNL E 442
22	CC4	SOFTWARE	SER E:218 , UNL E:444 , UNL E:445 , UNL E:446 , HOH E:1069	BINDING SITE FOR RESIDUE UNL E 443
23	CC5	SOFTWARE	TYR E:131 , UNL E:443	BINDING SITE FOR RESIDUE UNL E 444
24	CC6	SOFTWARE	VAL E:129 , ASN E:230 , LYS E:231 , UNL E:443	BINDING SITE FOR RESIDUE UNL E 445
25	CC7	SOFTWARE	SER E:216 , SER E:218 , UNL E:443	BINDING SITE FOR RESIDUE UNL E 446
26	CC8	SOFTWARE	UNL F:452	BINDING SITE FOR RESIDUE UNL F 451
27	CC9	SOFTWARE	GLU F:163 , TYR F:234 , UNL F:451	BINDING SITE FOR RESIDUE UNL F 452
28	DC1	SOFTWARE	TYR F:131 , UNL F:454	BINDING SITE FOR RESIDUE UNL F 453
29	DC2	SOFTWARE	SER F:218 , TYR F:220 , ASN F:230 , UNL F:453	BINDING SITE FOR RESIDUE UNL F 454

(no "SS Bond" information available for 3GQQ)

Asymmetric Unit

No.	Residues
1	Pro C:108	-	Pro C:109
2	Thr E:239	-	Pro E:240

(no "SAP(SNP)/Variant" information available for 3GQQ)

(no "PROSITE Motif" information available for 3GQQ)

(no "Exon" information available for 3GQQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:167
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:181
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 
          U119A_HUMAN    57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYS 237
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh............hhhhh....eeeeeeeee.....eeeeee..--------------.....eeeee.hhhhhhh.eeeeeeeee........eeeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq A  57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKKP--------------PNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYS 237
                                    66        76        86        96       106 |       -      |126       136       146       156    |  166       176       186       196       206|      216       226 |     236 
                                                                  96-MSE     108            123                                   161-MSE                                       207-MSE              228-MSE

Chain B from PDB  Type:PROTEIN  Length:178
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:183
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236   
          U119A_HUMAN    57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT 239
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh...........hhhhh....eeeeeeeee.....eeeeee..--...........---...eeeee.hhhhhhh.eeeeeeeee.........eeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq B  57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKKP--SERLPINRRDL---AGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYSGT 239
                                    66        76        86        96       106 |  |  116    |  126       136       146       156    |  166       176       186       196       206|      216       226 |     236   
                                                                  96-MSE     108  |       121 125                                 161-MSE                                       207-MSE              228-MSE       
                                                                                111

Chain C from PDB  Type:PROTEIN  Length:170
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:183
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235   
          U119A_HUMAN    56 RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...........hhhhh....eeeeeeeee.....eeeeee...-------------.....eeeee.hhhhhhh.eeeeeeeee.........eeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq C  56 RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKKPP-------------PNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYSG 238
                                    65        75        85        95|      105   |     -       125       135       145       155     | 165       175       185       195       205 |     215       225  |    235   
                                                                   96-MSE      109           123                                   161-MSE                                       207-MSE              228-MSE

Chain D from PDB  Type:PROTEIN  Length:181
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:183
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236   
          U119A_HUMAN    57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT 239
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh............hhhhh....eeeeeeeee.....eeeeee.................--..eeeee.hhhhhhh.eeeeeeeee........eeeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq D  57 KQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKKPPVSERLPINRRDLDP--GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYSGT 239
                                    66        76        86        96       106       116      |126       136       146       156    |  166       176       186       196       206|      216       226 |     236   
                                                                  96-MSE                    123  |                                161-MSE                                       207-MSE              228-MSE       
                                                                                               126

Chain E from PDB  Type:PROTEIN  Length:165
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:182
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238  
          U119A_HUMAN    59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP 240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............hhhhh....eeeeeeeee.....eeeeee.-----------------...eeeee.hhhhhhh.eeeeeeeee........eeeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq E  59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKK-----------------AGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYSGTP 240
                                    68        78        88       |98        |-         -      |128       138       148       158  |    168       178       188       198       208       218       228       238  
                                                                96-MSE    107               125                                 161-MSE                                       207-MSE              228-MSE

Chain F from PDB  Type:PROTEIN  Length:164
 aligned with U119A_HUMAN | Q13432 from UniProtKB/Swiss-Prot  Length:240

    Alignment length:181
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238 
          U119A_HUMAN    59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............hhhhh....eeeeeeeee.....eeeeee..-----------------..eeeee...hhhhh.eeeeeeeee........eeeeeeeee..eeeeeeeee........eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqq F  59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDmDSGTVLFEIKKP-----------------GRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRmIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEmIRHPYETQSDSFYFVDDRLVmHNKADYSYSGT 239
                                    68        78        88       |98       108         -       128       138       148       158  |    168       178       188       198       208       218       228       238 
                                                                96-MSE     108               126                                161-MSE                                       207-MSE              228-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GQQ)

(no "CATH Domain" information available for 3GQQ)

(no "Pfam Domain" information available for 3GQQ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (U119A_HUMAN | Q13432)

molecular function
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007268	chemical synaptic transmission	The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
	GO:0006897	endocytosis	A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
	GO:0042953	lipoprotein transport	The directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:2001287	negative regulation of caveolin-mediated endocytosis	Any process that stops, prevents or reduces the frequency, rate or extent of caveolin-mediated endocytosis.
	GO:1900186	negative regulation of clathrin-dependent endocytosis	Any process that stops, prevents or reduces the frequency, rate or extent of clathrin-mediated endocytosis.
	GO:0007602	phototransduction	The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
	GO:0061098	positive regulation of protein tyrosine kinase activity	Any process that increases the rate, frequency, or extent of protein tyrosine kinase activity.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
	GO:0005813	centrosome	A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0045171	intercellular bridge	A direct connection between the cytoplasm of two cells that is formed following the completion of cleavage furrow ingression during cell division. They are usually present only briefly prior to completion of cytokinesis. However, in some cases, such as the bridges between germ cells during their development, they become stabilised.
	GO:0005815	microtubule organizing center	An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
	GO:0005819	spindle	The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.
	GO:0051233	spindle midzone	The area in the center of the spindle where the spindle microtubules from opposite poles overlap.
	GO:0000922	spindle pole	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.

Asymmetric Unit
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	Cis Peptide Bonds
		Pro C:108 - Pro C:109	[ RasMol ]
		Thr E:239 - Pro E:240	[ RasMol ]

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	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
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		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

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	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	3gqq
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	U119A_HUMAN \| Q13432
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	U119A_HUMAN \| Q13432	:	3rbq 4goj 4gok 5l7k

(no "Related Entries Specified in the PDB File" available for 3GQQ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 54)

Sites (29, 29)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (0, 0)

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Gene Ontology (22, 22)

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Related Entries Specified in the PDB File