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3GQQ
Asym. Unit
Info
Asym.Unit (375 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (65 KB)
Biol.Unit 4 (68 KB)
Biol.Unit 5 (63 KB)
Biol.Unit 6 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN RETINAL PROTEIN 4 (UNC-119 HOMOLOG A). NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR3066A
Authors
:
S. M. Vorobiev, Y. Chen, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, S. Sahdev, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date
:
24 Mar 09 (Deposition) - 07 Apr 09 (Release) - 07 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Human Retinal Protein 4, Unc-119 Homolog A, Hrg4, U119A_human, Hr3066A, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Alternative Splicing, Phosphoprotein, Sensory Transduction, Vision
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Vorobiev, Y. Chen, J. Seetharaman, R. Shastry, E. L. Foote, C. Ciccosanti, S. Sahdev, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Human Retinal Protein 4 (Unc-119 Homolog A).
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 54)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
2a: UNKNOWN LIGAND (UNLa)
2aa: UNKNOWN LIGAND (UNLaa)
2ab: UNKNOWN LIGAND (UNLab)
2ac: UNKNOWN LIGAND (UNLac)
2ad: UNKNOWN LIGAND (UNLad)
2b: UNKNOWN LIGAND (UNLb)
2c: UNKNOWN LIGAND (UNLc)
2d: UNKNOWN LIGAND (UNLd)
2e: UNKNOWN LIGAND (UNLe)
2f: UNKNOWN LIGAND (UNLf)
2g: UNKNOWN LIGAND (UNLg)
2h: UNKNOWN LIGAND (UNLh)
2i: UNKNOWN LIGAND (UNLi)
2j: UNKNOWN LIGAND (UNLj)
2k: UNKNOWN LIGAND (UNLk)
2l: UNKNOWN LIGAND (UNLl)
2m: UNKNOWN LIGAND (UNLm)
2n: UNKNOWN LIGAND (UNLn)
2o: UNKNOWN LIGAND (UNLo)
2p: UNKNOWN LIGAND (UNLp)
2q: UNKNOWN LIGAND (UNLq)
2r: UNKNOWN LIGAND (UNLr)
2s: UNKNOWN LIGAND (UNLs)
2t: UNKNOWN LIGAND (UNLt)
2u: UNKNOWN LIGAND (UNLu)
2v: UNKNOWN LIGAND (UNLv)
2w: UNKNOWN LIGAND (UNLw)
2x: UNKNOWN LIGAND (UNLx)
2y: UNKNOWN LIGAND (UNLy)
2z: UNKNOWN LIGAND (UNLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
2
UNL
30
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
UNL A:402
BINDING SITE FOR RESIDUE UNL A 401
02
AC2
SOFTWARE
VAL A:143 , UNL A:401
BINDING SITE FOR RESIDUE UNL A 402
03
AC3
SOFTWARE
UNL A:404 , UNL A:405 , UNL A:406
BINDING SITE FOR RESIDUE UNL A 403
04
AC4
SOFTWARE
UNL A:403 , UNL A:405
BINDING SITE FOR RESIDUE UNL A 404
05
AC5
SOFTWARE
UNL A:403 , UNL A:404
BINDING SITE FOR RESIDUE UNL A 405
06
AC6
SOFTWARE
HIS A:165 , THR A:214 , TYR A:234 , TYR A:236 , UNL A:403
BINDING SITE FOR RESIDUE UNL A 406
07
AC7
SOFTWARE
UNL B:411
BINDING SITE FOR RESIDUE UNL B 410
08
AC8
SOFTWARE
HIS B:165 , UNL B:410 , UNL B:412
BINDING SITE FOR RESIDUE UNL B 411
09
AC9
SOFTWARE
UNL B:411 , UNL B:413 , HOH B:505
BINDING SITE FOR RESIDUE UNL B 412
10
BC1
SOFTWARE
ILE B:93 , UNL B:412
BINDING SITE FOR RESIDUE UNL B 413
11
BC2
SOFTWARE
ILE C:93 , UNL C:422
BINDING SITE FOR RESIDUE UNL C 421
12
BC3
SOFTWARE
UNL C:421
BINDING SITE FOR RESIDUE UNL C 422
13
BC4
SOFTWARE
HIS C:165 , THR C:214 , TYR C:236
BINDING SITE FOR RESIDUE UNL C 424
14
BC5
SOFTWARE
UNL D:432 , UNL D:433 , UNL D:434
BINDING SITE FOR RESIDUE UNL D 431
15
BC6
SOFTWARE
TYR D:234 , UNL D:431
BINDING SITE FOR RESIDUE UNL D 432
16
BC7
SOFTWARE
UNL D:431 , UNL D:434
BINDING SITE FOR RESIDUE UNL D 433
17
BC8
SOFTWARE
UNL D:431 , UNL D:433
BINDING SITE FOR RESIDUE UNL D 434
18
BC9
SOFTWARE
UNL D:436
BINDING SITE FOR RESIDUE UNL D 435
19
CC1
SOFTWARE
UNL D:435
BINDING SITE FOR RESIDUE UNL D 436
20
CC2
SOFTWARE
UNL E:442
BINDING SITE FOR RESIDUE UNL E 441
21
CC3
SOFTWARE
UNL E:441
BINDING SITE FOR RESIDUE UNL E 442
22
CC4
SOFTWARE
SER E:218 , UNL E:444 , UNL E:445 , UNL E:446 , HOH E:1069
BINDING SITE FOR RESIDUE UNL E 443
23
CC5
SOFTWARE
TYR E:131 , UNL E:443
BINDING SITE FOR RESIDUE UNL E 444
24
CC6
SOFTWARE
VAL E:129 , ASN E:230 , LYS E:231 , UNL E:443
BINDING SITE FOR RESIDUE UNL E 445
25
CC7
SOFTWARE
SER E:216 , SER E:218 , UNL E:443
BINDING SITE FOR RESIDUE UNL E 446
26
CC8
SOFTWARE
UNL F:452
BINDING SITE FOR RESIDUE UNL F 451
27
CC9
SOFTWARE
GLU F:163 , TYR F:234 , UNL F:451
BINDING SITE FOR RESIDUE UNL F 452
28
DC1
SOFTWARE
TYR F:131 , UNL F:454
BINDING SITE FOR RESIDUE UNL F 453
29
DC2
SOFTWARE
SER F:218 , TYR F:220 , ASN F:230 , UNL F:453
BINDING SITE FOR RESIDUE UNL F 454
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (375 KB)
Header - Asym.Unit
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Biol.Unit 3 (65 KB)
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Biol.Unit 4 (68 KB)
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