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Title :   THE CRYSTAL STRUCTURE OF FULL LENGTH ARL3GPPNHP IN COMPLEX WITH UNC119A

Authors :   S. Ismail, Y. Xiang-Chen, M. Miertzschke, I. Vetter, C. Koerner, A. Wit

Date :   20 Aug 12 (Deposition) - 19 Sep 12 (Release) - 31 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Small G Protein Arl, Gdi-Like Solubilizing Factors, Cilia, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. A. Ismail, Y. X. Chen, M. Miertzschke, I. R. Vetter, C. Koerner, A. Wittinghofer
Structural Basis For Arl3-Specific Release Of Myristoylated Ciliary Cargo From Unc119.
Embo J. V. 31 4085 2012
PubMed-ID: 22960633 | Reference-DOI: 10.1038/EMBOJ.2012.257

Molecule 1 - ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	ARL3
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 2 - PROTEIN UNC-119 HOMOLOG A
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	UNC119, RG4
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RETINAL PROTEIN 4, HRG4

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	GNP	2	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:25 , ASP A:26 , ASN A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ILE A:45 , THR A:48 , GLY A:69 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , SER A:159 , ALA A:160 , LEU A:161 , MG A:202 , HOH A:302 , HOH A:357 , HOH A:365 , HOH A:367	BINDING SITE FOR RESIDUE GNP A 201
2	AC2	SOFTWARE	THR A:31 , THR A:48 , GNP A:201 , HOH A:365 , HOH A:367	BINDING SITE FOR RESIDUE MG A 202
3	AC3	SOFTWARE	LEU B:25 , ASP B:26 , ASN B:27 , ALA B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , ILE B:45 , PRO B:47 , THR B:48 , GLY B:70 , ASN B:126 , LYS B:127 , ASP B:129 , LEU B:130 , SER B:159 , ALA B:160 , LEU B:161 , MG B:202 , HOH B:301 , HOH B:309 , HOH B:326 , HOH B:328	BINDING SITE FOR RESIDUE GNP B 201
4	AC4	SOFTWARE	THR B:31 , THR B:48 , GNP B:201 , HOH B:301 , HOH B:328	BINDING SITE FOR RESIDUE MG B 202

(no "SS Bond" information available for 4GOJ)

(no "Cis Peptide Bond" information available for 4GOJ)

(no "SAP(SNP)/Variant" information available for 4GOJ)

(no "PROSITE Motif" information available for 4GOJ)

(no "Exon" information available for 4GOJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains d4goja_ A: ADP-ribosylation factor                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goj A   3 LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains d4gojb_ B: ADP-ribosylation factor                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................................................................................................................................................................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goj B   2 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171

Chain C from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh............hhhhh....eeeeeeeee.....eeeeee...eeeeeehhhhhhh.eeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeee....hhhhhhhhhhh...eeeeeeeee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goj C  59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYS 237
                                    68        78        88        98       126       136       146       156       166       176       186       196       206       216       226       236 
                                                                          107|                                                                                                               
                                                                           126

Chain D from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..........hhhhh....eeeeeeeee.....eeeeee...eeeeeehhhhhhh.eeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeee....hhhhhhhhhh....eeeeeeeee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4goj D  59 PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYS 237
                                    68        78        88        98       126       136       146       156       166       176       186       196       206       216       226       236 
                                                                          107|                                                                                                               
                                                                           126

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: G proteins (693)

Protein domain: ADP-ribosylation factor (40)

Mouse (Mus musculus), ARL3 [TaxId: 10090] (2)

1a	d4goja_	A:
1b	d4gojb_	B:

(no "CATH Domain" information available for 4GOJ)

(no "Pfam Domain" information available for 4GOJ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	U119A_HUMAN \| Q13432
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UniProtKB/Swiss-Prot
	ARL3_MOUSE \| Q9WUL7	:	1fzq 3bh6 3bh7 4zi2 4zi3
	U119A_HUMAN \| Q13432	:	3gqq 3rbq 4gok 5l7k

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