3G4N - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE ACTIVATED AEROLYSIN MUTANT H132D

Authors :   L. Pernot, M. Schiltz, G. Van Der Goot

Date :   04 Feb 09 (Deposition) - 09 Feb 10 (Release) - 03 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Toxin, Cytolytic Toxin, Pore-Forming Toxin, Membrane, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Iacovache, M. T. Degiacomi, L. Pernot, S. Ho, M. Schiltz, M. Dal Peraro, F. G. Van Der Goot
Dual Chaperone Role Of The C-Terminal Propeptide In Folding And Oligomerization Of The Pore-Forming Toxin Aerolysin.
Plos Pathog. V. 7 02135 2011
PubMed-ID: 21779171 | Reference-DOI: 10.1371/JOURNAL.PPAT.1002135
(for further references see the PDB file header)

Molecule 1 - AEROLYSIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AERA
	Mutation	:	YES
	Organism Scientific	:	AEROMONAS HYDROPHILA
	Organism Taxid	:	644

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3G4N)

(no "Site" information available for 3G4N)

Asymmetric Unit

No.	Residues
1	A:19	-	A:75
2	A:159	-	A:164
3	B:19	-	B:75
4	B:159	-	B:164

(no "Cis Peptide Bond" information available for 3G4N)

(no "SAP(SNP)/Variant" information available for 3G4N)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AEROLYSIN	PS00274	Aerolysin type toxins signature.	AERA_AERHY	246-255	2	A:223-232 B:223-232

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AEROLYSIN	PS00274	Aerolysin type toxins signature.	AERA_AERHY	246-255	1	A:223-232 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AEROLYSIN	PS00274	Aerolysin type toxins signature.	AERA_AERHY	246-255	1	- B:223-232

(no "Exon" information available for 3G4N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:449
 aligned with AERA_AERHY | P09167 from UniProtKB/Swiss-Prot  Length:493

    Alignment length:466
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484      
           AERA_AERHY    25 EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPA 490
               SCOP domains d3g4na1 A:2-84 Proaerolysin, N-terminal domain                                     d3g4na2 A:85-467 (Pro)aerolysin, pore-forming lobe                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 3g4nA01 A:2-90 Pertussis Toxin, subunit B, domain 1                                      3g4nA02 A:91-176,A:311-397 Proaerolysin, chain A, domain 2                            3g4nA03 A:177-310,A:398-467 Proaerolysin, chain A, domain 3                                                                           3g4nA02 A:91-176,A:311-397 Proaerolysin, chain A, domain 2                             3g4nA03 A:177-310,A:398-46                 7 Proaerolysin, chain A, do CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhheee..........eee.hhhhhhhhhhhhhh......eee....eeee.hhhh..eee.....eeeee.............eee...hhhhhhhhhhh....hhhhhhhhhhhh................eeeeee..eeeeee...............eeeeeeeeeee.hhhhee....eeeeeeeeeeeeeeee........eeeeeeeeeeeeeee...hhhhh.ee....ee...........ee....hhhhh.eeeeeeeeeeee.......eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee................eeeeeeee....hhhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeee...ee...ee..-----------------.eee...hhhhhhhh..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEROLYSIN ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g4n A   2 EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNDSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLA-----------------LRLEIPLDAQELSGLGFNNVSLSVTPA 467
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 |       -       441       451       461      
                                                                                                                                                                                                                                                                                                                                                                                                                                                               423               441

Chain B from PDB  Type:PROTEIN  Length:428
 aligned with AERA_AERHY | P09167 from UniProtKB/Swiss-Prot  Length:493

    Alignment length:466
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484      
           AERA_AERHY    25 EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPA 490
               SCOP domains d3g4nb1 B:2-84 Proaerolysin, N-terminal domain                                     d3g4nb2 B:85-467 (Pro)aerolysin, pore-forming lobe                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 3g4nB01 B:2-90 Pertussis Toxin, subunit B, domain 1                                      3g4nB02 B:91-176,B:311-397 Proaerolysin, chain A, domain 2                            3g4nB03 B:177-310,B:398-467       Proaerolysin, chain A, domain 3                                                                     3g4nB02 B:91-176,B:311-397 Proaerolysin, chain A, domain 2                             3g4nB03 B:177-310,B:                           398-467                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhheee..........eee.hhhhhhhhhhhhhh......eeee...eeee.hhhh..eee.....eeeee.............eee...hhhhhhhhhhh....hhhhhhhhhhhhh...............eeeeee..eeeeee...............eeeeeeeeeeeeeeeeee......eeeeeeeeeee.------....eeeeeeeeeeeeeee....hhhhh......ee...........ee..........eeeeeeeeee......-----.eeeeeeeeeeeeeeeeeeeeeeeeeeeeee................eeeeeeee....hhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeeeeeeeee.---------------------------...hhhhhhhh.......eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEROLYSIN ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g4n B   2 EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNDSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWA------PQSGYDVTLRYDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTV-----IPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIG---------------------------IPLDAQELSGLGFNNVSLSVTPA 467
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  |    211       221       231       241       251       261       271       281   |   291       301       311       321       331       341       351       361       371       381       391       401       411     |   -         -         -   |   451       461      
                                                                                                                                                                                                                                    204    211                                                                       285   291                                                                                                                           417                         445

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 3G4N)

Asymmetric Unit(hide GO term definitions)

Chain A,B (AERA_AERHY | P09167)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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(no "Sites" information available for 3g4n)

	Cis Peptide Bonds
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	3g4n
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	AERA_AERHY \| P09167	:	1pre 1z52 3c0m 3c0n 3c0o 3g4o 5jzh 5jzt 5jzw

1pre	STRUCTURE OF THE WILD-TYPE PROAEROLYSIN
1z52	STRUCTURE OF THE PROAEROLYSIN MUTANT W373L
3c0n	STRUCTURE OF THE PROAEROLYSIN MUTANT Y221G
3g4o	STRUCTURE OF THE ACTIVATED AEROLYSIN MUTANT H132N

Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (4, 4)

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