3E85 - JenaLib

Title :   CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2B FROM YELLOW LUPINE IN COMPLEX WITH DIPHENYLUREA

Authors :   H. C. Fernandes, G. Bujacz, A. Bujacz, M. M. Sikorski, M. Jaskolski

Date :   19 Aug 08 (Deposition) - 03 Mar 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Plant Hormones, Cytokinin, Diphenylurea, Plant Pr-10 Protein, Yellow Lupine, Pathogenesis-Related Protein, Plant Defense, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Fernandes, A. Bujacz, G. Bujacz, F. Jelen, M. Jasinski, P. Kachlicki, J. Otlewski, M. M. Sikorski, M. Jaskolski
Cytokinin-Induced Structural Adaptability Of A Lupinus Luteus Pr-10 Protein.
Febs J. V. 276 1596 2009
PubMed-ID: 19220853 | Reference-DOI: 10.1111/J.1742-4658.2009.06892.X
(for further references see the PDB file header)

Compounds

Molecule 1 - PR10.2B
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET3A
	Expression System Strain	:	BL21 (DE3) PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PR10.2B, YPR10.2B
	Organism Common	:	EUROPEAN YELLOW LUPIN
	Organism Scientific	:	LUPINUS LUTEUS
	Organism Taxid	:	3873
	Synonym	:	CLASS 10 PLANT PATHOGENESIS-RELATED PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:22 , LEU A:55 , HIS A:68 , TYR A:80 , PHE A:142 , HOH A:211	BINDING SITE FOR RESIDUE BSU A 158
2	AC2	SOFTWARE	THR A:36 , ILE A:37 , LEU A:55 , PHE A:57 , ARG A:138	BINDING SITE FOR RESIDUE BSU A 159
3	AC3	SOFTWARE	TYR A:9 , LEU A:22 , PHE A:99 , THR A:101 , GLY A:139 , PHE A:143 , HOH A:197 , HOH A:211 , HOH A:279	BINDING SITE FOR RESIDUE BSU A 160
4	AC4	SOFTWARE	PHE A:5 , GLY A:89 , ILE A:117 , GLY A:132 , ALA A:135 , ARG A:138 , HOH A:193 , HOH A:295	BINDING SITE FOR RESIDUE BSU A 161
5	AC5	SOFTWARE	PRO A:31 , ILE A:37 , HOH A:209 , HOH A:226 , HOH A:259	BINDING SITE FOR RESIDUE NA A 162
6	AC6	SOFTWARE	THR A:121 , GLY A:123 , HOH A:229 , HOH A:231 , HOH A:246	BINDING SITE FOR RESIDUE NA A 163

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:154
 aligned with Q9LLQ2_LUPLU | Q9LLQ2 from UniProtKB/TrEMBL  Length:158

    Alignment length:154
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151    
         Q9LLQ2_LUPLU     2 GVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHP 155
               SCOP domains d3e85a_ A: automated matches                                                                                                                               SCOP domains
               CATH domains 3e85A00 A:1-154  [code=3.30.530.20, no name defined]                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..hhhhhhhhhh.hhhhhhhhhh..eeeeeeee.......eeeeeeee..eeeeeeeeeeeee....eeeeeeeee......eeeeeeeeeeee.hhh.eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e85 A   1 GVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHP 154
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q9LLQ2_LUPLU | Q9LLQ2)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607	response to biotic stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

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