2FLH - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CYTOKININ-SPECIFIC BINDING PROTEIN FROM MUNG BEAN IN COMPLEX WITH CYTOKININ

Authors :   O. Pasternak, G. D. Bujacz, M. M. Sikorski, M. Jaskolski

Date :   06 Jan 06 (Deposition) - 21 Nov 06 (Release) - 20 May 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Cytokinins, Zeatin, Pathogenesis-Related Proteins, Multiple- Ligand Binding, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Pasternak, G. D. Bujacz, Y. Fujimoto, Y. Hashimoto, F. Jelen, J. Otlewski, M. M. Sikorski, M. Jaskolski
Crystal Structure Of Vigna Radiata Cytokinin-Specific Binding Protein In Complex With Zeatin.
Plant Cell V. 18 2622 2006
PubMed-ID: 16998071 | Reference-DOI: 10.1105/TPC.105.037119
(for further references see the PDB file header)

Molecule 1 - CYTOKININ-SPECIFIC BINDING PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PET-3A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	VRCSBP
	Organism Scientific	:	VIGNA RADIATA
	Organism Taxid	:	157791

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	NA	2	Ligand/Ion	SODIUM ION
2	ZEA	9	Ligand/Ion	(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	ZEA	3	Ligand/Ion	(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	ZEA	2	Ligand/Ion	(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	ZEA	2	Ligand/Ion	(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	ZEA	2	Ligand/Ion	(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP B:123 , ILE B:126 , HOH B:817 , HOH B:885 , HOH B:887 , HOH B:902	BINDING SITE FOR RESIDUE NA B 802
02	AC2	SOFTWARE	SER C:124 , ILE C:126 , HOH C:858 , HOH C:873 , HOH C:969	BINDING SITE FOR RESIDUE NA C 801
03	AC3	SOFTWARE	LEU A:22 , PHE A:26 , PHE A:56 , GLU A:69 , THR A:139 , TYR A:142 , ZEA A:702 , HOH A:719 , HOH A:728	BINDING SITE FOR RESIDUE ZEA A 701
04	AC4	SOFTWARE	LEU A:34 , ILE A:37 , VAL A:62 , GLN A:67 , GLY A:89 , TYR A:90 , GLN A:93 , ZEA A:701 , HOH A:728 , HOH A:731 , HOH A:763 , HOH A:818	BINDING SITE FOR RESIDUE ZEA A 702
05	AC5	SOFTWARE	LYS A:24 , ILE A:27 , ASP A:47 , GLY A:48 , HOH A:723 , HOH A:733 , HOH A:761 , HOH A:812 , HOH A:859 , ALA B:20 , VAL B:21 , ASP B:25	BINDING SITE FOR RESIDUE ZEA A 708
06	AC6	SOFTWARE	LEU B:22 , PHE B:26 , GLN B:67 , GLU B:69 , THR B:100 , THR B:139 , TYR B:142 , ZEA B:704 , HOH B:812	BINDING SITE FOR RESIDUE ZEA B 703
07	AC7	SOFTWARE	LEU B:34 , ILE B:37 , PHE B:56 , PHE B:58 , GLN B:67 , GLU B:69 , TYR B:90 , ZEA B:703 , HOH B:816 , HOH B:854 , HOH B:875	BINDING SITE FOR RESIDUE ZEA B 704
08	AC8	SOFTWARE	LEU C:22 , PHE C:26 , GLN C:67 , GLU C:69 , LEU C:83 , PHE C:102 , THR C:139 , HOH C:818 , HOH C:835 , HOH C:839	BINDING SITE FOR RESIDUE ZEA C 705
09	AC9	SOFTWARE	VAL C:2 , PRO C:35 , HIS C:36 , LEU C:59 , TYR C:97 , LYS C:99 , SER C:119 , HOH C:955 , HOH C:967	BINDING SITE FOR RESIDUE ZEA C 709
10	BC1	SOFTWARE	LEU D:22 , PHE D:26 , PHE D:56 , GLN D:67 , GLU D:69 , THR D:139 , TYR D:142 , ZEA D:707 , HOH D:719 , HOH D:731	BINDING SITE FOR RESIDUE ZEA D 706
11	BC2	SOFTWARE	LEU D:34 , PHE D:58 , VAL D:62 , GLN D:67 , GLY D:89 , TYR D:90 , GLN D:93 , ZEA D:706 , HOH D:731 , HOH D:763 , HOH D:834	BINDING SITE FOR RESIDUE ZEA D 707

(no "SS Bond" information available for 2FLH)

Asymmetric Unit

No.	Residues
1	Ser A:63	-	Pro A:64
2	Ser B:63	-	Pro B:64
3	Ser C:63	-	Pro C:64
4	Ser D:63	-	Pro D:64

(no "SAP(SNP)/Variant" information available for 2FLH)

(no "PROSITE Motif" information available for 2FLH)

(no "Exon" information available for 2FLH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with Q9ZWP8_VIGRA | Q9ZWP8 from UniProtKB/TrEMBL  Length:155

    Alignment length:151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 
         Q9ZWP8_VIGRA     1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLNQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLS 151
               SCOP domains d2flha_ A: automated matches                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..hhhhhhhhhhh...hhhhhhh...eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeeee.hhhh...eeeeeeeeeeee..eeeeeeeeeee.-------.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2flh A   1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDH-------VTPTKTSQSTLMYLRRLERYLS 151
                                    10        20        30        40        50        60        70        80        90       100       110       120 |     130       140       150 
                                                                                                                                                   122     130

Chain B from PDB  Type:PROTEIN  Length:153
 aligned with Q9ZWP8_VIGRA | Q9ZWP8 from UniProtKB/TrEMBL  Length:155

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         Q9ZWP8_VIGRA     1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLNQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNG 153
               SCOP domains d2flhb_ B: automated matches                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeeee.hhhh.eeeeeeeeeeeeee..eeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2flh B   1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNG 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:152
 aligned with Q9ZWP8_VIGRA | Q9ZWP8 from UniProtKB/TrEMBL  Length:155

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         Q9ZWP8_VIGRA     1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLNQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSN 152
               SCOP domains d2flhc_ C: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeeee.hhhh.eeeeeeeeeeeeee..eeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2flh C   1 MVKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSN 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:153
 aligned with Q9ZWP8_VIGRA | Q9ZWP8 from UniProtKB/TrEMBL  Length:155

    Alignment length:153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   
         Q9ZWP8_VIGRA     2 VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLNQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS 154
               SCOP domains d2flhd_ D: automated matches                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeeee.hhhh.eeeeeeeeeeeeee..eeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2flh D   2 VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS 154
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: TBP-like (289)

Superfamily: Bet v1-like (158)

Family: automated matches (39)

Protein domain: automated matches (39)

Mung bean (Vigna radiata) [TaxId: 157791] (2)

1a	d2flha_	A:
1b	d2flhb_	B:
1c	d2flhc_	C:
1d	d2flhd_	D:

(no "CATH Domain" information available for 2FLH)

(no "Pfam Domain" information available for 2FLH)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q9ZWP8_VIGRA | Q9ZWP8)

biological process
	GO:0006952		defense response		Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607		response to biotic stimulus		Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		ZEA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
		Ser A:63 - Pro A:64	[ RasMol ]
		Ser B:63 - Pro B:64	[ RasMol ]
		Ser C:63 - Pro C:64	[ RasMol ]
		Ser D:63 - Pro D:64	[ RasMol ]

Biological Units
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	2flh
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	Q9ZWP8_VIGRA \| Q9ZWP8	:	3c0v 4psb

1bv1	BIRCH POLLEN ALLERGEN BET V 1
1icx	CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE
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1xdf	CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LL- PR10.2A FROM YELLOW LUPINE

Description

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Ligands, Modified Residues, Ions (2, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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