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(-) Description

Title :  CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR-10.2B FROM YELLOW LUPINE IN COMPLEX WITH CYTOKININ
 
Authors :  H. C. Fernandes, O. Pasternak, G. Bujacz, A. Bujacz, M. M. Sikorski, M. J
Date :  05 Jul 07  (Deposition) - 29 Apr 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Trans-Zeatin, Cytokinin, Plant Hormones, Plant Protein, Pr-10 Protein, Pathogenesis-Related Protein, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Fernandes, O. Pasternak, G. Bujacz, A. Bujacz, M. M. Sikorski, M. Jaskolski
Lupinus Luteus Pathogenesis-Related Protein As A Reservoir For Cytokinin.
J. Mol. Biol. V. 378 1040 2008
PubMed-ID: 18406424  |  Reference-DOI: 10.1016/J.JMB.2008.03.027
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PR10.2B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PR10.2B, YPR10.2B
    Organism Common: YELLOW LUPINE
    Organism Scientific: LUPINUS LUTEUS
    Organism Taxid: 3873
    Synonym: CLASS 10 PLANT PATHOGENESIS-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL1Ligand/IonGLYCEROL
3ZEA4Ligand/Ion(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:31 , ILE A:37 , HOH A:183 , HOH A:247 , HOH A:260BINDING SITE FOR RESIDUE CA A 158
2AC2SOFTWAREILE A:30 , HIS A:68 , TYR A:80 , TYR A:82 , THR A:101 , PHE A:143 , HOH A:170 , HOH A:176 , HOH A:181BINDING SITE FOR RESIDUE ZEA A 159
3AC3SOFTWAREASP A:7 , TYR A:9 , TYR A:82 , PHE A:99 , ILE A:117 , ALA A:135 , HOH A:164 , HOH A:174 , HOH A:175BINDING SITE FOR RESIDUE ZEA A 160
4AC4SOFTWAREPHE A:57 , GLU A:59 , ARG A:138 , GLY A:139 , HOH A:167 , HOH A:168 , HOH A:173 , HOH A:211 , HOH A:213 , HOH A:242BINDING SITE FOR RESIDUE ZEA A 161
5AC5SOFTWAREPHE A:5 , GLN A:6 , ASP A:7 , ILE A:52 , LYS A:54 , GLU A:129 , LYS A:133 , HOH A:275 , HOH A:281 , HOH A:291BINDING SITE FOR RESIDUE ZEA A 162
6AC6SOFTWAREALA A:152 , HOH A:319 , HOH A:331BINDING SITE FOR RESIDUE GOL A 163

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QIM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QIM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QIM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QIM)

(-) Exons   (0, 0)

(no "Exon" information available for 2QIM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
 aligned with Q9LLQ2_LUPLU | Q9LLQ2 from UniProtKB/TrEMBL  Length:158

    Alignment length:157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       
         Q9LLQ2_LUPLU     2 GVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPDYN 158
               SCOP domains d2qima_ A: automated matches                                                                                                                                  SCOP domains
               CATH domains 2qimA00 A:1-157  [code=3.30.530.20, no name defined]                                                                                                          CATH domains
               Pfam domains Bet_v_1-2qimA01 A:1-153                                                                                                                                  ---- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh..eeeeeeee.......eeeeeeee..eeeeeeeeeeeeehhh.eeeeeeeee......eeeeeeeeeeee.....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qim A   1 GVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPDYN 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9LLQ2_LUPLU | Q9LLQ2)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0009607    response to biotic stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9LLQ2_LUPLU | Q9LLQ2: 3e85

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