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Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PATHOGENESIS-RELATED PROTEIN LLPR10.1B FROM YELLOW LUPINE

Authors :   J. Biesiadka, G. Bujacz, M. M. Sikorski, M. Jaskolski

Date :   13 Apr 01 (Deposition) - 10 Jul 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym./Biol. Unit : A,B

Keywords :   7-Stranded Beta Sheet, C-Terminal Helix, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Biesiadka, G. Bujacz, M. M. Sikorski, M. Jaskolski
Crystal Structures Of Two Homologous Pathogenesis-Related Proteins From Yellow Lupine.
J. Mol. Biol. V. 319 1223 2002
PubMed-ID: 12079359 | Reference-DOI: 10.1016/S0022-2836(02)00385-6
(for further references see the PDB file header)

Molecule 1 - PROTEIN LLR18B
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PET3A-LLPR10.1B
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Common	:	YELLOW LUPINE
	Organism Scientific	:	LUPINUS LUTEUS
	Organism Taxid	:	3873
	Synonym	:	LLPR10.1B

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1IFV)

(no "Site" information available for 1IFV)

(no "SS Bond" information available for 1IFV)

(no "Cis Peptide Bond" information available for 1IFV)

(no "SAP(SNP)/Variant" information available for 1IFV)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PATHOGENESIS_BETVI	PS00451	Pathogenesis-related proteins Bet v I family signature.	L18B_LUPLU	88-120	2	A:87-119 B:87-119

(no "Exon" information available for 1IFV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:155
 aligned with L18B_LUPLU | P52779 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
           L18B_LUPLU     2 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQIQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPNY 156
               SCOP domains d1ifva_ A: Plant pathogenesis-related protein PR10                                                                                                          SCOP domains
               CATH domains 1ifvA00 A:1-155  [code=3.30.530.20, no name defined]                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeee.......eeeeeeeeeeeeehhheeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:87-119------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ifv A   1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQIQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPNY 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:155
 aligned with L18B_LUPLU | P52779 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
           L18B_LUPLU     2 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQIQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPNY 156
               SCOP domains d1ifvb_ B: Plant pathogenesis-related protein PR10                                                                                                          SCOP domains
               CATH domains 1ifvB00 B:1-155  [code=3.30.530.20, no name defined]                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.......eeeeeee....eeeeeeeeeeee....eeeeeeee.......eeeeeeeeeeee.hhh.eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: B:87-119------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ifv B   1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQIQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPNY 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: TBP-like (289)

Superfamily: Bet v1-like (158)

Family: Pathogenesis-related protein 10 (PR10)-like (38)

Protein domain: Plant pathogenesis-related protein PR10 (4)

Yellow lupine (Lupinus luteus) [TaxId: 3873] (3)

1a	d1ifva_	A:
1b	d1ifvb_	B:

Asymmetric/Biological Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 (47)

Homologous Superfamily: [code=3.30.530.20, no name defined] (47)

Yellow lupine (Lupinus luteus) (4)

1a	1ifvA00	A:1-155
1b	1ifvB00	B:1-155

(no "Pfam Domain" information available for 1IFV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (L18B_LUPLU | P52779)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607	response to biotic stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

Asymmetric/Biological Unit
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1b6f	BETV 1-A MUTANT
1btv	MAJOR POLLEN ALLERGEN BETV 1
1icx	PATHOGENESIS-RELATED PROTEIN LLPR10.1A FROM YELLOW LUPINE

Description

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