Chain A from PDB Type:PROTEIN Length:199
aligned with CAF1M_YERPE | P26926 from UniProtKB/Swiss-Prot Length:258
Alignment length:227
41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251
CAF1M_YERPE 32 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNVTL 258
SCOP domains d3dsna1 A:9-147 Chaperone protein Caf1m d3dsna2 A:148-235 Caf1m SCOP domains
CATH domains -----3dsnA01 A:14-145 PapD-like ---3dsnA02 A:149-232 [code=2.60.40.1070, no name defined] --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee...eeeee.....eeeeeee.....eeeeeeeee.-------..eeee..eeee....eeeeeeee..........eeeeeeeeee...---------------------.eeeeeeeeeeeeeeee......hhhhhhhhheeeee..eeeeee.....eeeeeeee..ee....ee...eeeeee.........eeeeee..........eeee... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------PILI_CHAPERONE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dsn A 9 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDE-------DPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPK---------------------GVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNVTL 235
18 28 38 48 | -| 68 78 88 98 | - - 128 138 148 158 168 178 188 198 208 218 228
51 59 105 127
Chain B from PDB Type:PROTEIN Length:146
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:149
31 41 51 61 71 81 91 101 111 121 131 141 151 161
CAF1_YERPE 22 ADLTASTTATATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dsnb_ B: automated matches SCOP domains
CATH domains 3dsnB00 B:1-149 [code=2.60.40.1 310, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeeeee..eeeeeeeee.......-........eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee..ee...........eeeeeeee.........--.eeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dsn B 1 ADLTASFTATATLVEPARITLTYKEGAPITIM-NGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLA--KYTDAVTVTVSNQ 149
10 20 30 | | 40 50 60 70 80 90 100 110 120 130 | |140
32 | 134 |
34 137
Chain C from PDB Type:PROTEIN Length:132
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:132
48 58 68 78 88 98 108 118 128 138 148 158 168
CAF1_YERPE 39 RITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dsnc_ C: automated matches SCOP domains
CATH domains 3dsnC00 C:18-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeee...ee...........eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee...............eeeeeeeeeee.......eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
3dsn C 18 RITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
27 37 47 57 67 77 87 97 107 117 127 137 147
Chain D from PDB Type:PROTEIN Length:190
aligned with CAF1M_YERPE | P26926 from UniProtKB/Swiss-Prot Length:258
Alignment length:225
41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251
CAF1M_YERPE 32 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNV 256
SCOP domains d3dsnd1 D:9-147 Chaperone protein Caf1m d3dsnd2 D:148-233 Caf1m SCOP domains
CATH domains -----3dsnD01 D:14-145 PapD-like ---3dsnD02 D:149-232 [code=2.60.40.1070, no name defined] - CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee...eeeee....eeeeeeee.....eeeeeeee.--------..eeee..eeee....eeeeeeee..........eeeeeeeeee...-------------------.eeeeeeeeeeeeeeeeee......hhhhhhhhheeee...eeeeee.....eeeeeeee..ee....ee...eeeeee.--------.eeeee..........eee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------PILI_CHAPERONE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dsn D 9 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD--------DPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPK-------------------DVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDL--------NVSWRIINDQGGLDRLYSKNV 233
18 28 38 48 | -| 68 78 88 98 | - - |128 138 148 158 168 178 188 198 | - | 218 228
50 59 105 125 204 213
Chain E from PDB Type:PROTEIN Length:149
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:149
31 41 51 61 71 81 91 101 111 121 131 141 151 161
CAF1_YERPE 22 ADLTASTTATATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dsne_ E: automated matches SCOP domains
CATH domains 3dsnE00 E:1-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeeeee..eeeeeeeee................eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee...............eeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dsn E 1 ADLTASFTATATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
10 20 30 40 50 60 70 80 90 100 110 120 130 140
Chain F from PDB Type:PROTEIN Length:129
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:131
49 59 69 79 89 99 109 119 129 139 149 159 169
CAF1_YERPE 40 ITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dsnf_ F: automated matches SCOP domains
CATH domains 3dsnF00 F:19-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeee...ee...........eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee....--.........eeeeeeeeeee.......eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
3dsn F 19 ITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGEN--GDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
28 38 48 58 68 78 88 98 | -| 118 128 138 148
106 |
109
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |