Chain A from PDB Type:PROTEIN Length:203
aligned with CAF1M_YERPE | P26926 from UniProtKB/Swiss-Prot Length:258
Alignment length:228
40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250
CAF1M_YERPE 31 ASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNVTL 258
SCOP domains d3dosa1 A:8-147 Chaperone protein Caf1m d3dosa2 A:148-235 Caf1m SCOP domains
CATH domains ------3dosA01 A:14-145 PapD-like ---3dosA02 A:149-232 [code=2.60.40.1070, no name defined] --- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeee...eeeee.....eeeeeee.....eeeeeeeee..-----...eeee..eeee....eeeeeeee..........eeeeeeeeee...--------------------..eeeeeeeeeeeeeeee......hhhhhhhhheeeee..eeeeee.....eeeeeeee..ee....ee...eeeeee.........eeeeee..........eeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------PILI_CHAPERONE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3dos A 8 ASKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDEN-----EDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPK--------------------VGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNVTL 235
17 27 37 47 | -| 67 77 87 97 | - - 127 137 147 157 167 177 187 197 207 217 227
52 58 105 126
Chain B from PDB Type:PROTEIN Length:148
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:149
31 41 51 61 71 81 91 101 111 121 131 141 151 161
CAF1_YERPE 22 ADLTASTTATATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dosb_ B: automated matches SCOP domains
CATH domains 3dosB00 B:1-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeeeee..eeeeeeeee................eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee...............eeeeeeee.........-..eeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dos B 1 ADLTASFTVTATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLA-GKYTDAVTVTVSNQ 149
10 20 30 40 50 60 70 80 90 100 110 120 130 | | 140
134 |
136
Chain C from PDB Type:PROTEIN Length:135
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:135
45 55 65 75 85 95 105 115 125 135 145 155 165
CAF1_YERPE 36 EPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dosc_ C: automated matches SCOP domains
CATH domains 3dosC00 C:15-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .....eeeeee...ee...........eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee...............eeeeeeeeeee.......eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dos C 15 EPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
24 34 44 54 64 74 84 94 104 114 124 134 144
Chain D from PDB Type:PROTEIN Length:191
aligned with CAF1M_YERPE | P26926 from UniProtKB/Swiss-Prot Length:258
Alignment length:225
41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251
CAF1M_YERPE 32 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNV 256
SCOP domains d3dosd1 D:9-147 Chaperone protein Caf1m d3dosd2 D:148-233 Caf1m SCOP domains
CATH domains -----3dosD01 D:14-145 PapD-like ---3dosD02 D:149-232 [code=2.60.40.1070, no name defined] - CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee...eeeee.....eeeeeee.....eeeeeeee.--------..eeee..eeee....eeeeeeee..........eeeeeeeeee...-------------------.eeeeeeeeeeeeeeeeee......hhhhhhhhheeee...eeeeee.....eeeeeeee..ee....ee...eeeeee..-------.eeeee..........eee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------PILI_CHAPERONE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dos D 9 SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD--------DPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPK-------------------DVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLP-------NVSWRIINDQGGLDRLYSKNV 233
18 28 38 48 | -| 68 78 88 98 | - - |128 138 148 158 168 178 188 198 | - | 218 228
50 59 105 125 205 213
Chain E from PDB Type:PROTEIN Length:149
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:149
31 41 51 61 71 81 91 101 111 121 131 141 151 161
CAF1_YERPE 22 ADLTASTTATATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dose_ E: automated matches SCOP domains
CATH domains 3dosE00 E:1-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeeeee..eeeeeeeee................eeeeeeee......hhh.eeee........eeeee......eeeeeeeee.....ee..ee...............eeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dos E 1 ADLTASFTVTATLVEPARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
10 20 30 40 50 60 70 80 90 100 110 120 130 140
Chain F from PDB Type:PROTEIN Length:132
aligned with CAF1_YERPE | P26948 from UniProtKB/Swiss-Prot Length:170
Alignment length:134
46 56 66 76 86 96 106 116 126 136 146 156 166
CAF1_YERPE 37 PARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 170
SCOP domains d3dosf_ F: automated matches SCOP domains
CATH domains 3dosF00 F:16-149 [code=2.60.40.1310, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee...ee...........eeeeeeee......hhh.eeeee.......eeeee......eeeeeeeee.....ee..ee....--.........eeeeeeeeeee.......eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
3dos F 16 PARITLTYKEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNNHQFTTKVIGKDSRDFDISPKVNGEN--GDDVVLATGSQDFFVRSIGSKGGKLAAGKYTDAVTVTVSNQ 149
25 35 45 55 65 75 85 95 105| | 115 125 135 145
106 |
109
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |