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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE NAD AND TRICLOSAN-FORM
 
Authors :  J. M. Otero, A. J. Noel, P. Guardado-Calvo, A. L. Llamas-Saiz, M. J. Van
Date :  20 Nov 09  (Deposition) - 24 Nov 10  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Keywords :  Oxidoreductase, Fatty Acid Biosynthesis, Oxidation Reduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Otero, A. J. Noel, P. Guardado-Calvo, A. L. Llamas-Saiz, W. Wende B. Schierling, A. Pingoud, M. J. Van Raaij
High-Resolution Structures Of Thermus Thermophilus Enoyl- Acyl Carrier Protein Reductase In The Apo Form, In Complex With Nad(+) And In Complex With Nad(+) And Triclosan.
Acta Crystallogr. , Sect. F V. 68 1139 2012
PubMed-ID: 23027736  |  Reference-DOI: 10.1107/S1744309112033982

(-) Compounds

Molecule 1 - ENOYL-[ACYL CARRIER PROTEIN] REDUCTASE
    Atcc: 27634
    Chains: A, B, C, D
    EC Number: 1.3.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Variant: DE3
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Other Details: THERMUS THERMOPHILUS DNA OBTAINED FROM PROF. WOLFGANG LIEBL, GOETTINGEN.
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2TCL4Ligand/IonTRICLOSAN
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2TCL4Ligand/IonTRICLOSAN

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY D:15 , VAL D:16 , THR D:17 , SER D:21 , LEU D:22 , GLN D:42 , ALA D:65 , ASP D:66 , VAL D:67 , ALA D:93 , ILE D:94 , ALA D:95 , VAL D:120 , LEU D:145 , THR D:146 , LYS D:164 , ALA D:190 , GLY D:191 , PRO D:192 , VAL D:193 , THR D:195 , ALA D:197 , TCL D:1260 , HOH D:2007 , HOH D:2129 , HOH D:2130 , HOH D:2131 , HOH D:2132 , HOH D:2133 , HOH D:2135BINDING SITE FOR RESIDUE NAD D1259
2AC2SOFTWAREALA D:95 , ALA D:97 , TYR D:157 , MET D:160 , ALA D:197 , ALA D:198 , SER D:200 , ILE D:201 , NAD D:1259BINDING SITE FOR RESIDUE TCL D1260
3AC3SOFTWAREGLY C:15 , VAL C:16 , THR C:17 , SER C:21 , LEU C:22 , GLN C:42 , LEU C:46 , ALA C:65 , ASP C:66 , VAL C:67 , ALA C:93 , ILE C:94 , ALA C:95 , PHE C:96 , VAL C:120 , LEU C:145 , THR C:146 , LYS C:164 , ALA C:190 , GLY C:191 , PRO C:192 , VAL C:193 , THR C:195 , VAL C:196 , ALA C:197 , TCL C:1260 , HOH C:2013 , HOH C:2085 , HOH C:2132 , HOH C:2170 , HOH C:2171 , HOH C:2173 , HOH C:2174BINDING SITE FOR RESIDUE NAD C1259
4AC4SOFTWAREALA C:95 , ALA C:97 , TYR C:157 , ALA C:197 , SER C:200 , ILE C:201 , NAD C:1259BINDING SITE FOR RESIDUE TCL C1260
5AC5SOFTWAREGLY B:15 , VAL B:16 , THR B:17 , SER B:21 , LEU B:22 , GLN B:42 , ALA B:65 , ASP B:66 , VAL B:67 , ALA B:93 , ILE B:94 , ALA B:95 , VAL B:120 , LEU B:145 , THR B:146 , LYS B:164 , ALA B:190 , GLY B:191 , PRO B:192 , VAL B:193 , THR B:195 , ALA B:197 , TCL B:1260 , HOH B:2011 , HOH B:2012 , HOH B:2014 , HOH B:2159 , HOH B:2160 , HOH B:2161 , HOH B:2162BINDING SITE FOR RESIDUE NAD B1259
6AC6SOFTWAREALA B:95 , ALA B:97 , TYR B:157 , ALA B:197 , ILE B:201 , NAD B:1259BINDING SITE FOR RESIDUE TCL B1260
7AC7SOFTWAREGLY A:15 , VAL A:16 , THR A:17 , SER A:21 , LEU A:22 , GLN A:42 , ALA A:65 , ASP A:66 , VAL A:67 , ALA A:93 , ILE A:94 , ALA A:95 , VAL A:120 , LEU A:145 , THR A:146 , LYS A:164 , ALA A:190 , GLY A:191 , PRO A:192 , VAL A:193 , THR A:195 , ALA A:197 , TCL A:1261 , HOH A:2008 , HOH A:2097 , HOH A:2200 , HOH A:2201 , HOH A:2202 , HOH A:2203 , HOH A:2204BINDING SITE FOR RESIDUE NAD A1260
8AC8SOFTWAREALA A:95 , ALA A:97 , TYR A:157 , ALA A:197 , ILE A:201 , MET A:207 , NAD A:1260BINDING SITE FOR RESIDUE TCL A1261

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WYW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WYW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WYW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WYW)

(-) Exons   (0, 0)

(no "Exon" information available for 2WYW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
               SCOP domains d2wywa_ A: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wyw A   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         


Chain B from PDB  Type:PROTEIN  Length:258
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
               SCOP domains d2wywb_ B: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wyw B   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        


Chain C from PDB  Type:PROTEIN  Length:258
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
               SCOP domains d2wywc_ C: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wyw C   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        


Chain D from PDB  Type:PROTEIN  Length:258
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
               SCOP domains d2wywd_ D: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------adh_short_C2-2wywD01 D:15-253                                                                                                                                                                                                                  ----- Pfam domains (1)
           Pfam domains (2) --------------adh_short_C2-2wywD02 D:15-253                                                                                                                                                                                                                  ----- Pfam domains (2)
           Pfam domains (3) --------------adh_short_C2-2wywD03 D:15-253                                                                                                                                                                                                                  ----- Pfam domains (3)
           Pfam domains (4) --------------adh_short_C2-2wywD04 D:15-253                                                                                                                                                                                                                  ----- Pfam domains (4)
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wyw D   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WYW)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q5SLI9_THET8 | Q5SLI9)
molecular function
    GO:0004318    enoyl-[acyl-carrier-protein] reductase (NADH) activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SLI9_THET8 | Q5SLI9: 1ulu 2wyu 2wyv 2yw9

(-) Related Entries Specified in the PDB File

1ulu CRYSTAL STRUCTURE OF TT0143 FROM THERMUS THERMOPHILUS HB8
2wyu HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE APO-FORM
2wyv HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE NAD-FORM