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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE APO-FORM
 
Authors :  J. M. Otero, A. J. Noel, P. Guardado-Calvo, A. L. Llamas-Saiz, M. J. Van
Date :  20 Nov 09  (Deposition) - 24 Nov 10  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Fatty Acid Biosynthesis, Oxidation Reduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Otero, A. J. Noel, P. Guardado-Calvo, A. L. Llamas-Saiz, W. Wende B. Schierling, A. Pingoud, M. J. Van Raaij
High-Resolution Structures Of Thermus Thermophilus Enoyl- Acyl Carrier Protein Reductase In The Apo Form, In Complex With Nad(+) And In Complex With Nad(+) And Triclosan.
Acta Crystallogr. , Sect. F V. 68 1139 2012
PubMed-ID: 23027736  |  Reference-DOI: 10.1107/S1744309112033982

(-) Compounds

Molecule 1 - ENOYL-[ACYL CARRIER PROTEIN] REDUCTASE
    Atcc: 27634
    Chains: A, B, C, D
    EC Number: 1.3.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Variant: DE3
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Other Details: THERMUS THERMOPHILUS DNA OBTAINED FROM PROF. WOLFGANG LIEBL, GOETTINGEN.
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NA3Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:42 , PHE A:96 , HOH A:2313 , HOH A:2314BINDING SITE FOR RESIDUE GOL A1257
2AC2SOFTWAREHOH C:2095BINDING SITE FOR RESIDUE GOL C1259
3AC3SOFTWAREGLU D:100 , GLU D:103 , HOH D:2054 , HOH D:2137 , HOH D:2139BINDING SITE FOR RESIDUE NA D1260
4AC4SOFTWAREGLU B:100 , GLU B:103 , HOH B:2158 , HOH B:2160 , HOH B:2164BINDING SITE FOR RESIDUE NA B1260
5AC5SOFTWAREGLU A:100 , GLU A:103 , HOH A:2084 , HOH A:2191 , HOH A:2197 , HOH A:2203BINDING SITE FOR RESIDUE NA A1258

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WYU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WYU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WYU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WYU)

(-) Exons   (0, 0)

(no "Exon" information available for 2WYU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250      
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMG 256
               SCOP domains d2wyua_ A: automated matches                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wyu A   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMG 256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250      


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
               SCOP domains d2wyub_ B: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....---------hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wyu B   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVR---------FTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   |     -   |   210       220       230       240       250         
                                                                                                                                                                                                                           194       204                                                       


Chain C from PDB  Type:PROTEIN  Length:258
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
               SCOP domains d2wyuc_ C: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wyu C   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        


Chain D from PDB  Type:PROTEIN  Length:245
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
               SCOP domains d2wyud_ D: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------adh_short_C2-2wyuD01 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (1)
           Pfam domains (2) --------------adh_short_C2-2wyuD02 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (2)
           Pfam domains (3) --------------adh_short_C2-2wyuD03 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (3)
           Pfam domains (4) --------------adh_short_C2-2wyuD04 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (4)
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee...--------------hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wyu D   1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPV--------------YDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  |      -       210       220       230       240       250         
                                                                                                                                                                                                                          193            208
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WYU)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q5SLI9_THET8 | Q5SLI9)
molecular function
    GO:0004318    enoyl-[acyl-carrier-protein] reductase (NADH) activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SLI9_THET8 | Q5SLI9: 1ulu 2wyv 2wyw 2yw9

(-) Related Entries Specified in the PDB File

1ulu CRYSTAL STRUCTURE OF TT0143 FROM THERMUS THERMOPHILUS HB8
2wyv HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE NAD-FORM
2wyw HIGH RESOLUTION STRUCTURE OF THERMUS THERMOPHILUS ENOYL-ACYL CARRIER PROTEIN REDUCTASE NAD AND TRICLOSAN-FORM