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(-) Description

Title :  CRYSTAL STRUCTURE OF TT0143 FROM THERMUS THERMOPHILUS HB8
 
Authors :  H. Ago, K. Hamada, K. Ida, H. Kanda, M. Sugahara, M. Yamamoto, Y. Nodake, S. Kuramitsu, S. Yokoyama, M. Miyano, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  16 Sep 03  (Deposition) - 02 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ago, K. Hamada, K. Ida, H. Kanda, M. Sugahara, M. Yamamoto, Y. Nodake, S. Kuramitsu, S. Yokoyama, M. Miyano
Crystal Structure Of Tt0143 From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ENOYL-ACYL CARRIER PROTEIN REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.3.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 26)

Asymmetric/Biological Unit (1, 26)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ULU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ULU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ULU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ULU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ULU)

(-) Exons   (0, 0)

(no "Exon" information available for 1ULU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:256
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250      
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMG 256
               SCOP domains d1ulua_ A: Enoyl-ACP reductase                                                                                                                                                                                                                                   SCOP domains
               CATH domains -1uluA00 A:2-256 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee...----------hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ulu A   1 mLTVDLSGKKALVmGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAmEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVmAIAKAALEASVRYLAYELGPKGVRVNAISAGPV----------FTKmYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHImG 256
                            |       10   |    20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190  |      -   |  |210       220       230       240       250    | 
                            |           14-MSE                                                                                 102-MSE                                                   160-MSE                          193        204  |                                             255-MSE
                            1-MSE                                                                                                                                                                                                       207-MSE                                             


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGM 257
               SCOP domains d1ulub_ B: Enoyl-ACP reductase                                                                                                                                                                                                                                    SCOP domains
               CATH domains -1uluB00 B:2-256 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                            - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ulu B   1 mLTVDLSGKKALVmGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAmEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVmAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKmYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHImGm 257
                            |       10   |    20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190       200      |210       220       230       240       250    | |
                            |           14-MSE                                                                                 102-MSE                                                   160-MSE                                        207-MSE                                         255-MSE
                            1-MSE                                                                                                                                                                                                                                                         257-MSE


Chain C from PDB  Type:PROTEIN  Length:244
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:258
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258
               SCOP domains d1uluc_ C: Enoyl-ACP reductase                                                                                                                                                                                                                                     SCOP domains
               CATH domains -1uluC00 C:2-258 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee...--------------hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ulu C   1 mLTVDLSGKKALVmGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAmEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVmAIAKAALEASVRYLAYELGPKGVRVNAISAGPV--------------YDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHImGmE 258
                            |       10   |    20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190  |      -       210       220       230       240       250    | | 
                            |           14-MSE                                                                                 102-MSE                                                   160-MSE                          193            208                                            255-MSE
                            1-MSE                                                                                                                                                                                                                                                         257-MSE


Chain D from PDB  Type:PROTEIN  Length:248
 aligned with Q5SLI9_THET8 | Q5SLI9 from UniProtKB/TrEMBL  Length:261

    Alignment length:259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         
         Q5SLI9_THET8     1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGMEL 259
               SCOP domains d1ulud_ D: Enoyl-ACP reductase                                                                                                                                                                                                                                      SCOP domains
               CATH domains -1uluD00 D:2-259 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                CATH domains
           Pfam domains (1) --------------adh_short_C2-1uluD01 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (1)
           Pfam domains (2) --------------adh_short_C2-1uluD02 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (2)
           Pfam domains (3) --------------adh_short_C2-1uluD03 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (3)
           Pfam domains (4) --------------adh_short_C2-1uluD04 D:15-253                                                                                                                                                                                                                  ------ Pfam domains (4)
         Sec.struct. author .eee.....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh.eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....-----------hhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ulu D   1 mLTVDLSGKKALVmGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAmEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVmAIAKAALEASVRYLAYELGPKGVRVNAISAGPVR-----------KmYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHImGmEL 259
                            |       10   |    20        30        40        50        60        70        80        90       100 |     110       120       130       140       150       160       170       180       190   |     -     ||210       220       230       240       250    | |  
                            |           14-MSE                                                                                 102-MSE                                                   160-MSE                           194         206|                                             255-MSE
                            1-MSE                                                                                                                                                                                                       207-MSE                                           257-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q5SLI9_THET8 | Q5SLI9)
molecular function
    GO:0004318    enoyl-[acyl-carrier-protein] reductase (NADH) activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADH + H+.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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UniProtKB/TrEMBL
        Q5SLI9_THET8 | Q5SLI9: 2wyu 2wyv 2wyw 2yw9

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