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(-) Description

Title :  FASCIOLA HEPATICA SIGMA CLASS GST
 
Authors :  K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
Date :  26 Mar 09  (Deposition) - 21 Apr 10  (Release) - 21 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Thioredoxin Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
The 1. 6 Angstrom Crystal Structure Of The Fasciola Hepatica Sigma Class Gst
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE TRANSFERASE SIGMA CLASS
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: LIVER FLUKE
    Organism Scientific: FASCIOLA HEPATICA
    Organism Taxid: 6192
    Synonym: GLUTATHIONE TRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1BR8Ligand/IonBROMIDE ION
2DMS5Ligand/IonDIMETHYL SULFOXIDE
3GDS2Ligand/IonOXIDIZED GLUTATHIONE DISULFIDE
4GSH2Ligand/IonGLUTATHIONE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2DMS3Ligand/IonDIMETHYL SULFOXIDE
3GDS1Ligand/IonOXIDIZED GLUTATHIONE DISULFIDE
4GSH1Ligand/IonGLUTATHIONE
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3GDS1Ligand/IonOXIDIZED GLUTATHIONE DISULFIDE
4GSH1Ligand/IonGLUTATHIONE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:10 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , ARG A:107 , TYR A:110 , HOH A:2215 , HOH A:2216 , HOH A:2217 , ASP B:104 , ARG B:107 , GLU B:108 , ASN B:131 , LEU B:135 , HOH B:2152BINDING SITE FOR RESIDUE GDS A 300
02AC2SOFTWAREASP A:104 , GLU A:108 , ASN A:130 , ASN A:131 , PRO A:183 , HOH A:2179 , TYR B:10 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , TYR B:110 , ARG B:114 , HOH B:2092 , HOH B:2257 , HOH B:2258 , HOH B:2259 , HOH B:2260 , HOH B:2261BINDING SITE FOR RESIDUE GDS B 300
03AC3SOFTWAREPHE A:11 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , DMS A:1214 , HOH A:2215 , HOH A:2216 , ASP B:104 , HOH B:2152BINDING SITE FOR RESIDUE GSH A 301
04AC4SOFTWAREASP A:104 , PHE B:11 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , DMS B:1212 , HOH B:2092 , HOH B:2258 , HOH B:2261BINDING SITE FOR RESIDUE GSH B 301
05AC5SOFTWAREGLU A:90 , LEU A:94 , ARG B:67 , TYR B:68BINDING SITE FOR RESIDUE DMS A1212
06AC6SOFTWAREGLN A:180 , TYR B:10 , PHE B:13 , GLY B:15 , GSH B:301BINDING SITE FOR RESIDUE DMS B1212
07AC7SOFTWAREPHE B:6 , ARG B:66 , TYR B:68 , LEU B:77 , LEU B:78 , GLN B:81BINDING SITE FOR RESIDUE DMS B1213
08AC8SOFTWAREARG A:67 , TYR A:68 , HOH A:2088 , GLU B:90BINDING SITE FOR RESIDUE DMS A1213
09AC9SOFTWARETYR A:10 , PHE A:13 , GLY A:15 , GSH A:301BINDING SITE FOR RESIDUE DMS A1214
10BC1SOFTWAREPHE A:164 , THR A:168 , ARG A:206 , BR A:1218BINDING SITE FOR RESIDUE BR A1215
11BC2SOFTWARESER A:140 , PHE A:182 , PRO A:183 , LYS A:184BINDING SITE FOR RESIDUE BR A1216
12BC3SOFTWARELYS A:181 , HOH A:2032BINDING SITE FOR RESIDUE BR A1217
13BC4SOFTWAREGLU B:18 , ARG B:21 , TYR B:202 , ARG B:206 , HOH B:2029BINDING SITE FOR RESIDUE BR B1214
14BC5SOFTWAREARG A:14 , THR A:165 , THR A:168 , HIS A:169 , BR A:1215BINDING SITE FOR RESIDUE BR A1218
15BC6SOFTWAREGLY B:60 , ASP B:62 , GLY B:63 , LYS B:64BINDING SITE FOR RESIDUE BR B1215
16BC7SOFTWAREGLU B:18 , PHE B:164 , THR B:168 , ARG B:206BINDING SITE FOR RESIDUE BR B1216
17BC8SOFTWARELYS A:64 , MET B:38 , HOH B:2016 , HOH B:2023BINDING SITE FOR RESIDUE BR B1217

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:26 -A:196
2B:26 -B:196

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:53 -Pro A:54
2Val B:53 -Pro B:54

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WDU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WDU)

(-) Exons   (0, 0)

(no "Exon" information available for 2WDU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
 aligned with Q06A71_FASHE | Q06A71 from UniProtKB/TrEMBL  Length:211

    Alignment length:210
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
         Q06A71_FASHE     2 DKQHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTLTHVMETVPGFLEQKFPKLHEFHKSLPTSCSRLSEYLKKRAKTPF 211
               SCOP domains d2wdua1 A:2-84 automated matches                                                   d2wdua2 A:85-211 automated matches                                                                                              SCOP domains
               CATH domains 2wduA01 A:2-83 Glutaredoxin                                                       2wduA02 A:84-211  [code=1.20.1050.10, no name defined]                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhh....eeeee...hhhhhhhhhhhhh..eeeee.....eeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wdu A   2 DKQHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTLTHVMETVPGFLEQKFPKLHEFHKSLPTSCSRLSEYLKKRAKTPF 211
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211


Chain B from PDB  Type:PROTEIN  Length:210
 aligned with Q06A71_FASHE | Q06A71 from UniProtKB/TrEMBL  Length:211

    Alignment length:210
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
         Q06A71_FASHE     2 DKQHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTLTHVMETVPGFLEQKFPKLHEFHKSLPTSCSRLSEYLKKRAKTPF 211
               SCOP domains d2wdub1 B:2-84 automated matches                                                   d2wdub2 B:85-211 automated matches                                                                                              SCOP domains
               CATH domains 2wduB01 B:2-83 Glutaredoxin                                                       2wduB02 B:84-211  [code=1.20.1050.10, no name defined]                                                                           CATH domains
           Pfam domains (1) -----GST_N-2wduB03 B:7-80                                                      -----GST_C-2wduB01 B:86-193                                                                                      ------------------ Pfam domains (1)
           Pfam domains (2) -----GST_N-2wduB04 B:7-80                                                      -----GST_C-2wduB02 B:86-193                                                                                      ------------------ Pfam domains (2)
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhhh..eeeee.....eeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wdu B   2 DKQHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKEFKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTLTHVMETVPGFLEQKFPKLHEFHKSLPTSCSRLSEYLKKRAKTPF 211
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 4)

Asymmetric Unit
(-)
Clan: GST_C (118)
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q06A71_FASHE | Q06A71)
molecular function
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q06A71_FASHE | Q06A71: 2wb9

(-) Related Entries Specified in the PDB File

2wb9 FASCIOLA HEPATICA SIGMA CLASS GST