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2WDU
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
FASCIOLA HEPATICA SIGMA CLASS GST
Authors
:
K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
Date
:
26 Mar 09 (Deposition) - 21 Apr 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Thioredoxin Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
The 1. 6 Angstrom Crystal Structure Of The Fasciola Hepatica Sigma Class Gst
To Be Published
[
close entry info
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
3a: OXIDIZED GLUTATHIONE DISULFIDE (GDSa)
3b: OXIDIZED GLUTATHIONE DISULFIDE (GDSb)
4a: GLUTATHIONE (GSHa)
4b: GLUTATHIONE (GSHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
8
Ligand/Ion
BROMIDE ION
2
DMS
5
Ligand/Ion
DIMETHYL SULFOXIDE
3
GDS
2
Ligand/Ion
OXIDIZED GLUTATHIONE DISULFIDE
4
GSH
2
Ligand/Ion
GLUTATHIONE
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:10 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , ARG A:107 , TYR A:110 , HOH A:2215 , HOH A:2216 , HOH A:2217 , ASP B:104 , ARG B:107 , GLU B:108 , ASN B:131 , LEU B:135 , HOH B:2152
BINDING SITE FOR RESIDUE GDS A 300
02
AC2
SOFTWARE
ASP A:104 , GLU A:108 , ASN A:130 , ASN A:131 , PRO A:183 , HOH A:2179 , TYR B:10 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , TYR B:110 , ARG B:114 , HOH B:2092 , HOH B:2257 , HOH B:2258 , HOH B:2259 , HOH B:2260 , HOH B:2261
BINDING SITE FOR RESIDUE GDS B 300
03
AC3
SOFTWARE
PHE A:11 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , DMS A:1214 , HOH A:2215 , HOH A:2216 , ASP B:104 , HOH B:2152
BINDING SITE FOR RESIDUE GSH A 301
04
AC4
SOFTWARE
ASP A:104 , PHE B:11 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , DMS B:1212 , HOH B:2092 , HOH B:2258 , HOH B:2261
BINDING SITE FOR RESIDUE GSH B 301
05
AC5
SOFTWARE
GLU A:90 , LEU A:94 , ARG B:67 , TYR B:68
BINDING SITE FOR RESIDUE DMS A1212
06
AC6
SOFTWARE
GLN A:180 , TYR B:10 , PHE B:13 , GLY B:15 , GSH B:301
BINDING SITE FOR RESIDUE DMS B1212
07
AC7
SOFTWARE
PHE B:6 , ARG B:66 , TYR B:68 , LEU B:77 , LEU B:78 , GLN B:81
BINDING SITE FOR RESIDUE DMS B1213
08
AC8
SOFTWARE
ARG A:67 , TYR A:68 , HOH A:2088 , GLU B:90
BINDING SITE FOR RESIDUE DMS A1213
09
AC9
SOFTWARE
TYR A:10 , PHE A:13 , GLY A:15 , GSH A:301
BINDING SITE FOR RESIDUE DMS A1214
10
BC1
SOFTWARE
PHE A:164 , THR A:168 , ARG A:206 , BR A:1218
BINDING SITE FOR RESIDUE BR A1215
11
BC2
SOFTWARE
SER A:140 , PHE A:182 , PRO A:183 , LYS A:184
BINDING SITE FOR RESIDUE BR A1216
12
BC3
SOFTWARE
LYS A:181 , HOH A:2032
BINDING SITE FOR RESIDUE BR A1217
13
BC4
SOFTWARE
GLU B:18 , ARG B:21 , TYR B:202 , ARG B:206 , HOH B:2029
BINDING SITE FOR RESIDUE BR B1214
14
BC5
SOFTWARE
ARG A:14 , THR A:165 , THR A:168 , HIS A:169 , BR A:1215
BINDING SITE FOR RESIDUE BR A1218
15
BC6
SOFTWARE
GLY B:60 , ASP B:62 , GLY B:63 , LYS B:64
BINDING SITE FOR RESIDUE BR B1215
16
BC7
SOFTWARE
GLU B:18 , PHE B:164 , THR B:168 , ARG B:206
BINDING SITE FOR RESIDUE BR B1216
17
BC8
SOFTWARE
LYS A:64 , MET B:38 , HOH B:2016 , HOH B:2023
BINDING SITE FOR RESIDUE BR B1217
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2wdua2 (A:85-211)
1b: SCOP_d2wdub2 (B:85-211)
2a: SCOP_d2wdua1 (A:2-84)
2b: SCOP_d2wdub1 (B:2-84)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Fasciola hepatica [TaxId: 6192]
(3)
1a
d2wdua2
A:85-211
1b
d2wdub2
B:85-211
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Fasciola hepatica [TaxId: 6192]
(4)
2a
d2wdua1
A:2-84
2b
d2wdub1
B:2-84
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2wduA01 (A:2-83)
1b: CATH_2wduB01 (B:2-83)
2a: CATH_2wduA02 (A:84-211)
2b: CATH_2wduB02 (B:84-211)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Liver fluke (Fasciola hepatica)
(5)
1a
2wduA01
A:2-83
1b
2wduB01
B:2-83
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Liver fluke (Fasciola hepatica)
(4)
2a
2wduA02
A:84-211
2b
2wduB02
B:84-211
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_2wduB01 (B:86-193)
1b: PFAM_GST_C_2wduB02 (B:86-193)
2a: PFAM_GST_N_2wduB03 (B:7-80)
2b: PFAM_GST_N_2wduB04 (B:7-80)
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Clans
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(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Fasciola hepatica (Liver fluke)
(3)
1a
GST_C-2wduB01
B:86-193
1b
GST_C-2wduB02
B:86-193
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Fasciola hepatica (Liver fluke)
(3)
2a
GST_N-2wduB03
B:7-80
2b
GST_N-2wduB04
B:7-80
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