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2WDU
Biol. Unit 1
Info
Asym.Unit (90 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
FASCIOLA HEPATICA SIGMA CLASS GST
Authors
:
K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
Date
:
26 Mar 09 (Deposition) - 21 Apr 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Thioredoxin Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Line, M. N. Isupov, E. J. Lacourse, P. M. Brophy, J. A. Littlechild
The 1. 6 Angstrom Crystal Structure Of The Fasciola Hepatica Sigma Class Gst
To Be Published
[
close entry info
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
3a: OXIDIZED GLUTATHIONE DISULFIDE (GDSa)
3b: OXIDIZED GLUTATHIONE DISULFIDE (GDSb)
4a: GLUTATHIONE (GSHa)
4b: GLUTATHIONE (GSHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
3
GDS
1
Ligand/Ion
OXIDIZED GLUTATHIONE DISULFIDE
4
GSH
1
Ligand/Ion
GLUTATHIONE
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:10 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , ARG A:107 , TYR A:110 , HOH A:2215 , HOH A:2216 , HOH A:2217 , ASP B:104 , ARG B:107 , GLU B:108 , ASN B:131 , LEU B:135 , HOH B:2152
BINDING SITE FOR RESIDUE GDS A 300
02
AC2
SOFTWARE
ASP A:104 , GLU A:108 , ASN A:130 , ASN A:131 , PRO A:183 , HOH A:2179 , TYR B:10 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , TYR B:110 , ARG B:114 , HOH B:2092 , HOH B:2257 , HOH B:2258 , HOH B:2259 , HOH B:2260 , HOH B:2261
BINDING SITE FOR RESIDUE GDS B 300
03
AC3
SOFTWARE
PHE A:11 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , DMS A:1214 , HOH A:2215 , HOH A:2216 , ASP B:104 , HOH B:2152
BINDING SITE FOR RESIDUE GSH A 301
04
AC4
SOFTWARE
ASP A:104 , PHE B:11 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , DMS B:1212 , HOH B:2092 , HOH B:2258 , HOH B:2261
BINDING SITE FOR RESIDUE GSH B 301
05
AC5
SOFTWARE
GLU A:90 , LEU A:94 , ARG B:67 , TYR B:68
BINDING SITE FOR RESIDUE DMS A1212
06
AC6
SOFTWARE
GLN A:180 , TYR B:10 , PHE B:13 , GLY B:15 , GSH B:301
BINDING SITE FOR RESIDUE DMS B1212
07
AC8
SOFTWARE
ARG A:67 , TYR A:68 , HOH A:2088 , GLU B:90
BINDING SITE FOR RESIDUE DMS A1213
08
AC9
SOFTWARE
TYR A:10 , PHE A:13 , GLY A:15 , GSH A:301
BINDING SITE FOR RESIDUE DMS A1214
09
BC1
SOFTWARE
PHE A:164 , THR A:168 , ARG A:206 , BR A:1218
BINDING SITE FOR RESIDUE BR A1215
10
BC2
SOFTWARE
SER A:140 , PHE A:182 , PRO A:183 , LYS A:184
BINDING SITE FOR RESIDUE BR A1216
11
BC3
SOFTWARE
LYS A:181 , HOH A:2032
BINDING SITE FOR RESIDUE BR A1217
12
BC5
SOFTWARE
ARG A:14 , THR A:165 , THR A:168 , HIS A:169 , BR A:1215
BINDING SITE FOR RESIDUE BR A1218
13
BC8
SOFTWARE
LYS A:64 , MET B:38 , HOH B:2016 , HOH B:2023
BINDING SITE FOR RESIDUE BR B1217
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2wdua2 (A:85-211)
1b: SCOP_d2wdub2 (B:85-211)
2a: SCOP_d2wdua1 (A:2-84)
2b: SCOP_d2wdub1 (B:2-84)
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Classes
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)
(
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Fasciola hepatica [TaxId: 6192]
(3)
1a
d2wdua2
A:85-211
1b
d2wdub2
B:85-211
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Fasciola hepatica [TaxId: 6192]
(4)
2a
d2wdua1
A:2-84
2b
d2wdub1
B:2-84
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2wduA01 (A:2-83)
1b: CATH_2wduB01 (B:2-83)
2a: CATH_2wduA02 (A:84-211)
2b: CATH_2wduB02 (B:84-211)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Liver fluke (Fasciola hepatica)
(5)
1a
2wduA01
A:2-83
1b
2wduB01
B:2-83
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Liver fluke (Fasciola hepatica)
(4)
2a
2wduA02
A:84-211
2b
2wduB02
B:84-211
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_2wduB01 (B:86-193)
1b: PFAM_GST_C_2wduB02 (B:86-193)
2a: PFAM_GST_N_2wduB03 (B:7-80)
2b: PFAM_GST_N_2wduB04 (B:7-80)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Fasciola hepatica (Liver fluke)
(3)
1a
GST_C-2wduB01
B:86-193
1b
GST_C-2wduB02
B:86-193
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Fasciola hepatica (Liver fluke)
(3)
2a
GST_N-2wduB03
B:7-80
2b
GST_N-2wduB04
B:7-80
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]
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Chain A
Asymmetric Unit 1
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Asym.Unit (90 KB)
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