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(-) Description

Title :  CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN W38F MUTANT
 
Authors :  L. -O. Essen, B. Meissner
Date :  29 Jul 08  (Deposition) - 17 Nov 09  (Release) - 25 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Dodecins, Coenzyme A, Flavin Dimer, Flavoprotein, Hypothetical Protein, Flavin Binding Protein, Protein Binding Putative Storage Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. G. Gurzadyan, B. Meissner, B. Sander, L. -O. Essen, M. E. Michel-Beyerle
Ultrafast Charge Transfer Dynamics In Flavoprotein Dodecin
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TTHA1431
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: DODECIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 29)

Asymmetric/Biological Unit (4, 29)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2COA12Ligand/IonCOENZYME A
3FMN12Ligand/IonFLAVIN MONONUCLEOTIDE
4NA1Ligand/IonSODIUM ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:5 , ASP A:37 , PHE A:38 , ARG A:65 , FMN A:1072 , HOH A:2023 , HOH A:2036 , ARG B:45 , THR B:47 , GLN B:57BINDING SITE FOR RESIDUE FMN A1070
02AC2SOFTWAREARG A:28 , THR A:32 , ARG A:34 , HIS A:35 , PHE A:64 , ARG A:65 , LEU A:66 , GLU A:67 , COA A:1073 , HOH A:2037 , HOH A:2038 , HOH A:2039 , LYS H:6 , LYS L:6 , VAL L:8 , ARG L:28 , LEU L:33 , PHE L:64 , LEU L:66 , COA L:1068BINDING SITE FOR RESIDUE COA A1071
03AC3SOFTWAREFMN A:1070 , HOH A:2040 , HOH A:2041 , HOH A:2042 , GLN B:57 , LYS G:3 , TYR G:5 , ASP G:37 , PHE G:38 , ARG G:65 , ARG H:45 , THR H:47 , GLN H:57BINDING SITE FOR RESIDUE FMN A1072
04AC4SOFTWARELYS A:6 , VAL A:8 , LEU A:33 , PHE A:64 , LEU A:66 , COA A:1071 , GLU F:16 , ARG H:28 , THR H:32 , LEU H:33 , ARG H:34 , HIS H:35 , PHE H:64 , ARG H:65 , GLU H:67 , LYS L:6 , LEU L:66 , COA L:1068BINDING SITE FOR RESIDUE COA A1073
05AC5SOFTWARELYS A:6 , HOH A:2002 , LYS H:6 , LYS L:6BINDING SITE FOR RESIDUE CL A1074
06AC6SOFTWARELYS B:3 , TYR B:5 , ASP B:37 , PHE B:38 , ARG B:65 , FMN B:1070 , HOH B:2045 , ARG C:45 , THR C:47 , GLN C:57 , VAL F:11 , GLN F:57BINDING SITE FOR RESIDUE FMN B1068
07AC7SOFTWAREARG B:28 , THR B:32 , LEU B:33 , ARG B:34 , HIS B:35 , PHE B:64 , ARG B:65 , GLU B:67 , HOH B:2047 , HOH B:2048 , HOH B:2050 , LYS F:6 , LEU F:66 , COA F:1071 , LYS G:6 , VAL G:8 , LEU G:66 , COA G:1070BINDING SITE FOR RESIDUE COA B1069
08AC8SOFTWAREFMN B:1068 , HOH B:2051 , VAL C:11 , LYS E:3 , TYR E:5 , ASP E:37 , PHE E:38 , ARG E:65 , ARG F:45 , THR F:47 , GLN F:57BINDING SITE FOR RESIDUE FMN B1070
09AC9SOFTWARELYS B:6 , LYS F:6 , LYS G:6BINDING SITE FOR RESIDUE CL B1071
10BC1SOFTWAREARG A:45 , THR A:47 , GLN A:57 , TYR C:5 , ASP C:37 , PHE C:38 , ARG C:65 , FMN C:1072 , HOH C:2021 , HOH C:2044 , GLN J:57BINDING SITE FOR RESIDUE FMN C1070
11BC2SOFTWAREARG C:28 , THR C:32 , ARG C:34 , HIS C:35 , PHE C:64 , ARG C:65 , LEU C:66 , GLU C:67 , HOH C:2045 , HOH C:2046 , HOH C:2047 , HOH C:2048 , HOH C:2049 , LYS E:6 , VAL E:8 , ARG E:28 , LEU E:33 , LEU E:66 , COA E:1070 , LYS J:6 , LEU J:66 , COA J:1070BINDING SITE FOR RESIDUE COA C1071
12BC3SOFTWAREGLN A:57 , FMN C:1070 , HOH C:2050 , HOH C:2051 , HOH C:2052 , ARG J:45 , THR J:47 , GLN J:57 , LYS L:3 , TYR L:5 , ASP L:37 , PHE L:38 , ARG L:65 , HOH L:2010BINDING SITE FOR RESIDUE FMN C1072
13BC4SOFTWARELYS C:6 , LYS E:6 , LYS J:6BINDING SITE FOR RESIDUE CL C1073
14BC5SOFTWARELYS D:3 , TYR D:5 , ASP D:37 , PHE D:38 , ARG D:65 , FMN D:1072 , HOH D:2026 , HOH D:2048 , HOH D:2049 , HOH D:2050 , HOH D:2051 , ARG E:45 , THR E:47 , GLN E:57 , GLN K:57BINDING SITE FOR RESIDUE FMN D1070
15BC6SOFTWAREARG D:28 , THR D:32 , ARG D:34 , ARG D:65 , LEU D:66 , GLU D:67 , HOH D:2021 , HOH D:2054 , LYS I:6 , VAL I:8 , PHE I:64 , LEU I:66 , COA I:1070 , LYS K:6 , COA K:1070 , HOH K:2018 , HOH K:2032BINDING SITE FOR RESIDUE COA D1071
16BC7SOFTWAREFMN D:1070 , HOH D:2055 , HOH D:2056 , ARG E:45 , GLN E:57 , TYR J:5 , ASP J:37 , PHE J:38 , ARG J:65 , HOH J:2021 , ARG K:45 , THR K:47 , GLN K:57BINDING SITE FOR RESIDUE FMN D1072
17BC8SOFTWARELYS D:6 , LYS I:6 , LYS K:6BINDING SITE FOR RESIDUE CL D1073
18BC9SOFTWAREHIS B:35 , ARG B:65 , HOH B:2040 , LYS C:6 , COA C:1071 , ARG E:28 , THR E:32 , LEU E:33 , ARG E:34 , HIS E:35 , PHE E:64 , ARG E:65 , GLU E:67 , HOH E:2015 , HOH E:2042 , HOH E:2043 , LYS J:6 , VAL J:8 , LEU J:33 , PHE J:64 , LEU J:66 , COA J:1070BINDING SITE FOR RESIDUE COA E1070
19CC1SOFTWAREARG D:45 , THR D:47 , GLN D:57 , LYS F:3 , TYR F:5 , ASP F:37 , PHE F:38 , ARG F:65 , FMN F:1072 , HOH F:2021 , HOH F:2024 , HOH F:2042 , HOH F:2044 , GLN G:57BINDING SITE FOR RESIDUE FMN F1070
20CC2SOFTWARELYS B:6 , VAL B:8 , ALA B:29 , LEU B:66 , COA B:1069 , HOH B:2047 , ARG F:28 , THR F:32 , LEU F:33 , ARG F:34 , HIS F:35 , ARG F:65 , LEU F:66 , GLU F:67 , HOH F:2013 , HOH F:2023 , HOH F:2046 , LYS G:6 , LEU G:66 , COA G:1070BINDING SITE FOR RESIDUE COA F1071
21CC3SOFTWAREGLN D:57 , FMN F:1070 , HOH F:2047 , HOH F:2048 , HOH F:2049 , HOH F:2050 , HOH F:2052 , ARG G:45 , THR G:47 , GLN G:57 , TYR I:5 , ASP I:37 , PHE I:38 , ARG I:65 , HOH I:2022BINDING SITE FOR RESIDUE FMN F1072
22CC4SOFTWAREHOH D:2031 , HOH D:2039 , HOH F:2044BINDING SITE FOR RESIDUE NA F1073
23CC5SOFTWARELYS B:6 , LEU B:66 , COA B:1069 , HOH B:2030 , ARG D:65 , LYS F:6 , VAL F:8 , LEU F:33 , PHE F:64 , LEU F:66 , COA F:1071 , ARG G:28 , THR G:32 , LEU G:33 , ARG G:34 , HIS G:35 , PHE G:64 , ARG G:65 , LEU G:66 , GLU G:67 , HOH G:2048 , HOH G:2049 , HOH G:2050BINDING SITE FOR RESIDUE COA G1070
24CC6SOFTWAREHIS C:35 , TYR H:5 , ASP H:37 , PHE H:38 , ARG H:65 , FMN H:1071 , HOH H:2032 , HOH H:2033 , HOH H:2034 , HOH H:2035 , ARG I:45 , THR I:47 , GLN I:57 , HOH I:2028 , GLN L:57BINDING SITE FOR RESIDUE FMN H1070
25CC7SOFTWAREFMN H:1070 , HOH H:2036 , HOH H:2037 , GLN I:57 , LYS K:3 , TYR K:5 , ASP K:37 , PHE K:38 , ARG K:65 , HOH K:2017 , ARG L:45 , THR L:47 , GLN L:57BINDING SITE FOR RESIDUE FMN H1071
26CC8SOFTWARELYS D:6 , COA D:1071 , HOH D:2006 , ARG I:28 , THR I:32 , LEU I:33 , ARG I:34 , HIS I:35 , PHE I:64 , ARG I:65 , GLU I:67 , HOH I:2043 , LYS K:6 , VAL K:8 , LEU K:10 , LEU K:33 , PHE K:64 , LEU K:66 , COA K:1070BINDING SITE FOR RESIDUE COA I1070
27CC9SOFTWARELYS C:6 , VAL C:8 , ALA C:29 , LEU C:33 , PHE C:64 , LEU C:66 , COA C:1071 , LYS E:6 , LEU E:66 , COA E:1070 , ARG J:28 , THR J:32 , LEU J:33 , ARG J:34 , HIS J:35 , ARG J:65 , GLU J:67 , HOH J:2042BINDING SITE FOR RESIDUE COA J1070
28DC1SOFTWARELYS D:6 , VAL D:8 , ARG D:28 , PHE D:64 , LEU D:66 , COA D:1071 , LYS I:6 , COA I:1070 , ARG K:28 , THR K:32 , ARG K:34 , HIS K:35 , PHE K:64 , ARG K:65 , GLU K:67 , HOH K:2033 , HOH K:2034BINDING SITE FOR RESIDUE COA K1070
29DC2SOFTWARELYS A:6 , LEU A:66 , COA A:1071 , COA A:1073 , HOH A:2038 , ALA D:51 , LYS H:6 , VAL H:8 , PHE H:64 , LEU H:66 , ARG L:28 , THR L:32 , ARG L:34 , HIS L:35 , PHE L:64 , ARG L:65 , GLU L:67 , HOH L:2027BINDING SITE FOR RESIDUE COA L1068

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VYX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VYX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VYX)

(-) Exons   (0, 0)

(no "Exon" information available for 2VYX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxa_ A: automated matches                                         SCOP domains
               CATH domains 2vyxA00 A:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx A  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain B from PDB  Type:PROTEIN  Length:66
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:66
                                    11        21        31        41        51        61      
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLE 67
               SCOP domains d2vyxb_ B: automated matches                                       SCOP domains
               CATH domains 2vyxB00 B:2-67 Flavin-binding protein dodecin                      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  2vyx B  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLE 67
                                    11        21        31        41        51        61      


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxc_ C: automated matches                                         SCOP domains
               CATH domains 2vyxC00 C:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx C  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxd_ D: automated matches                                         SCOP domains
               CATH domains 2vyxD00 D:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx D  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxe_ E: automated matches                                         SCOP domains
               CATH domains 2vyxE00 E:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx E  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxf_ F: automated matches                                         SCOP domains
               CATH domains 2vyxF00 F:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx F  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain G from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxg_ G: automated matches                                         SCOP domains
               CATH domains 2vyxG00 G:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx G  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain H from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxh_ H: automated matches                                         SCOP domains
               CATH domains 2vyxH00 H:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx H  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain I from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxi_ I: automated matches                                         SCOP domains
               CATH domains 2vyxI00 I:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx I  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain J from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxj_ J: automated matches                                         SCOP domains
               CATH domains 2vyxJ00 J:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx J  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain K from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2vyxk_ K: automated matches                                         SCOP domains
               CATH domains 2vyxK00 K:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2vyx K  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain L from PDB  Type:PROTEIN  Length:66
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:66
                                    11        21        31        41        51        61      
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLE 67
               SCOP domains d2vyxl_ L: automated matches                                       SCOP domains
               CATH domains 2vyxL00 L:2-67 Flavin-binding protein dodecin                      CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                  2vyx L  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDFFEVKEIRGTIGEAGVKEYQVVLEVGFRLE 67
                                    11        21        31        41        51        61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

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(no "Pfam Domain" information available for 2VYX)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DODEC_THET8 | Q5SIE3)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DODEC_THET8 | Q5SIE3: 2cz8 2deg 2ux9 2v18 2v19 2v21

(-) Related Entries Specified in the PDB File

2ux9 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R65A MUTANT
2v18 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN
2v19 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R45A MUTANT
2v21 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN IN COMPLEX WITH PREBOUND FMN