Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN
 
Authors :  B. Meissner, L. -O. Essen
Date :  22 May 07  (Deposition) - 11 Sep 07  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Flavoprotein, Hypothetical Protein, Flavin Binding Protein, Dodecins, Coenzyme A, Flavin Dimer, Flavoprotein Putative Storage Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Meissner, E. Schleicher, S. Weber, L. -O. Essen
The Dodecin From Thermus Thermophilus, A Bifunctional Cofactor Storage Protein.
J. Biol. Chem. V. 282 33142 2007
PubMed-ID: 17855371  |  Reference-DOI: 10.1074/JBC.M704951200

(-) Compounds

Molecule 1 - DODECIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Fragment: RESIDUES 2-69
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: HYPOTHETICAL PROTEIN TTHA1431

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric/Biological Unit (2, 21)
No.NameCountTypeFull Name
1COA9Ligand/IonCOENZYME A
2FMN12Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:3 , TYR A:5 , ASP A:37 , TRP A:38 , ARG A:65 , ARG B:45 , THR B:47 , GLN B:57 , FMN G:101 , ARG H:45 , GLN H:57BINDING SITE FOR RESIDUE FMN A 101
02AC2SOFTWARELYS B:3 , TYR B:5 , ASP B:37 , TRP B:38 , ARG B:65 , ARG C:45 , THR C:47 , GLN C:57 , FMN E:101 , ARG F:45 , GLN F:57BINDING SITE FOR RESIDUE FMN B 101
03AC3SOFTWAREARG B:28 , THR B:32 , LEU B:33 , ARG B:34 , HIS B:35 , ARG B:65 , GLU B:67 , LYS F:6 , COA F:201 , LYS G:6 , VAL G:8 , ARG G:28 , LEU G:33 , LEU G:66 , COA G:201BINDING SITE FOR RESIDUE COA B 201
04AC4SOFTWAREARG A:45 , THR A:47 , GLN A:57 , LYS C:3 , TYR C:5 , ASP C:37 , TRP C:38 , ARG C:65 , ARG J:45 , GLN J:57 , FMN L:101BINDING SITE FOR RESIDUE FMN C 101
05AC5SOFTWAREARG C:28 , THR C:32 , LEU C:33 , ARG C:34 , HIS C:35 , ARG C:65 , LEU C:66 , GLU C:67 , LYS E:6 , VAL E:8 , LEU E:10 , ALA E:29 , LEU E:33 , PHE E:64 , LEU E:66 , COA E:201 , LYS J:6 , LEU J:66 , COA J:201BINDING SITE FOR RESIDUE COA C 201
06AC6SOFTWARELYS D:3 , TYR D:5 , ASP D:37 , TRP D:38 , ARG D:65 , ARG E:45 , THR E:47 , GLN E:57 , FMN J:101 , ARG K:45 , GLN K:57BINDING SITE FOR RESIDUE FMN D 101
07AC7SOFTWAREARG D:28 , THR D:32 , ARG D:34 , ARG D:65 , GLU D:67 , LYS I:6 , VAL I:8 , LEU I:66 , COA I:201 , LYS K:6 , COA K:201BINDING SITE FOR RESIDUE COA D 201
08AC8SOFTWAREFMN B:101 , ARG C:45 , GLN C:57 , LYS E:3 , TYR E:5 , ASP E:37 , TRP E:38 , ARG F:45 , THR F:47 , GLN F:57BINDING SITE FOR RESIDUE FMN E 101
09AC9SOFTWAREHIS B:35 , ARG B:65 , LYS C:6 , COA C:201 , ARG E:28 , THR E:32 , LEU E:33 , ARG E:34 , HIS E:35 , ARG E:65 , LEU E:66 , GLU E:67 , LYS J:6 , VAL J:8 , ALA J:29 , LEU J:33 , LEU J:66 , COA J:201BINDING SITE FOR RESIDUE COA E 201
10BC1SOFTWAREARG D:45 , THR D:47 , GLN D:57 , LYS F:3 , TYR F:5 , ASP F:37 , TRP F:38 , ARG F:65 , ARG G:45 , GLN G:57 , FMN I:101BINDING SITE FOR RESIDUE FMN F 101
11BC2SOFTWARELYS B:6 , VAL B:8 , LEU B:10 , LEU B:33 , LEU B:66 , COA B:201 , ARG F:28 , THR F:32 , LEU F:33 , ARG F:34 , HIS F:35 , PHE F:64 , ARG F:65 , LEU F:66 , GLU F:67 , LYS G:6 , LEU G:66 , COA G:201BINDING SITE FOR RESIDUE COA F 201
12BC3SOFTWAREFMN A:101 , VAL B:11 , ARG B:45 , GLN B:57 , LYS G:3 , TYR G:5 , ASP G:37 , TRP G:38 , ARG G:65 , ARG H:45 , THR H:47 , GLN H:57BINDING SITE FOR RESIDUE FMN G 101
13BC4SOFTWARELYS B:6 , LEU B:66 , COA B:201 , ARG D:65 , LYS F:6 , VAL F:8 , PHE F:64 , LEU F:66 , COA F:201 , ARG G:28 , THR G:32 , LEU G:33 , ARG G:34 , HIS G:35 , PHE G:64 , ARG G:65 , LEU G:66 , GLU G:67BINDING SITE FOR RESIDUE COA G 201
14BC5SOFTWAREHIS C:35 , LYS H:3 , TYR H:5 , ASP H:37 , TRP H:38 , ARG H:65 , ARG I:45 , THR I:47 , GLN I:57 , FMN K:101 , VAL L:11 , GLN L:57BINDING SITE FOR RESIDUE FMN H 101
15BC6SOFTWAREARG D:45 , GLN D:57 , FMN F:101 , ARG G:45 , THR G:47 , GLN G:57 , LYS I:3 , TYR I:5 , ASP I:37 , TRP I:38 , ARG I:65BINDING SITE FOR RESIDUE FMN I 101
16BC7SOFTWARELYS D:6 , COA D:201 , HIS F:35 , ARG I:28 , THR I:32 , LEU I:33 , ARG I:34 , HIS I:35 , PHE I:64 , ARG I:65 , LEU I:66 , GLU I:67 , LYS K:6 , VAL K:8 , LEU K:66 , COA K:201BINDING SITE FOR RESIDUE COA I 201
17BC8SOFTWAREFMN D:101 , ARG E:45 , GLN E:57 , LYS J:3 , TYR J:5 , ASP J:37 , TRP J:38 , ARG J:65 , ARG K:45 , THR K:47 , GLN K:57BINDING SITE FOR RESIDUE FMN J 101
18BC9SOFTWARELYS C:6 , VAL C:8 , LEU C:10 , ALA C:29 , LEU C:33 , PHE C:64 , LEU C:66 , COA C:201 , LYS E:6 , COA E:201 , ARG J:28 , THR J:32 , LEU J:33 , ARG J:34 , PHE J:64 , ARG J:65 , GLU J:67BINDING SITE FOR RESIDUE COA J 201
19CC1SOFTWAREFMN H:101 , GLN I:57 , LYS K:3 , TYR K:5 , ASP K:37 , TRP K:38 , ARG K:65 , ARG L:45 , THR L:47 , GLN L:57BINDING SITE FOR RESIDUE FMN K 101
20CC2SOFTWARELYS D:6 , VAL D:8 , LEU D:10 , COA D:201 , LYS I:6 , LEU I:66 , COA I:201 , ARG K:28 , THR K:32 , ARG K:34 , PHE K:64 , ARG K:65 , LEU K:66 , GLU K:67BINDING SITE FOR RESIDUE COA K 201
21CC3SOFTWAREGLN A:57 , FMN C:101 , ARG J:45 , THR J:47 , GLN J:57 , HIS K:35 , LYS L:3 , TYR L:5 , ASP L:37 , TRP L:38 , ARG L:65BINDING SITE FOR RESIDUE FMN L 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2V18)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2V18)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V18)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2V18)

(-) Exons   (0, 0)

(no "Exon" information available for 2V18)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18a_ A: automated matches                                         SCOP domains
               CATH domains 2v18A00 A:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 A  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18b_ B: automated matches                                         SCOP domains
               CATH domains 2v18B00 B:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 B  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain C from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18c_ C: automated matches                                         SCOP domains
               CATH domains 2v18C00 C:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 C  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18d_ D: automated matches                                         SCOP domains
               CATH domains 2v18D00 D:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 D  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18e_ E: automated matches                                         SCOP domains
               CATH domains 2v18E00 E:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 E  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain F from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18f_ F: automated matches                                         SCOP domains
               CATH domains 2v18F00 F:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 F  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain G from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18g_ G: automated matches                                         SCOP domains
               CATH domains 2v18G00 G:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 G  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain H from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18h_ H: automated matches                                         SCOP domains
               CATH domains 2v18H00 H:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 H  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain I from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18i_ I: automated matches                                         SCOP domains
               CATH domains 2v18I00 I:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 I  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain J from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18j_ J: automated matches                                         SCOP domains
               CATH domains 2v18J00 J:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 J  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain K from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18k_ K: automated matches                                         SCOP domains
               CATH domains 2v18K00 K:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 K  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61        


Chain L from PDB  Type:PROTEIN  Length:68
 aligned with DODEC_THET8 | Q5SIE3 from UniProtKB/Swiss-Prot  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
           DODEC_THET8    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2v18l_ L: automated matches                                         SCOP domains
               CATH domains 2v18L00 L:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2v18 L  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2V18)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DODEC_THET8 | Q5SIE3)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    COA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FMN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2v18)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2v18
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DODEC_THET8 | Q5SIE3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  DODEC_THET8 | Q5SIE3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DODEC_THET8 | Q5SIE3: 2cz8 2deg 2ux9 2v19 2v21 2vyx

(-) Related Entries Specified in the PDB File

2ux9 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R65A MUTANT
2v19 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R45A MUTANT
2v21 CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN IN COMPLEX WITH PREBOUND FMN