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2VJJ
Biol. Unit 1
Info
Asym.Unit (118 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH HEXASACCHARIDE
Authors
:
J. J. Mueller, S. Barbirz, C. Uetrecht, R. Seckler, U. Heinemann
Date
:
11 Dec 07 (Deposition) - 01 Jul 08 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Viral Protein, Endo-N-Acetylglucosaminidase, Viral Adhesion Protein, Right-Handed Parallel Beta-Helix, Hydrolase, Tailspike
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Barbirz, J. J. Mueller, C. Uetrecht, A. J. Clark, U. Heinemann, R. Seckler
Crystal Structure Of Escherichia Coli Phage Hk620 Tailspike: Podoviral Tailspike Endoglycosidase Modules Are Evolutionarily Related.
Mol. Microbiol. V. 69 303 2008
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Hetero Components
(5, 39)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CHLORIDE ION (CLa)
3a: BETA-D-GALACTOSE (GALa)
4a: ALPHA-D-GLUCOSE (GLCa)
4b: ALPHA-D-GLUCOSE (GLCb)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
6a: POTASSIUM ION (Ka)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8a: ALPHA-L-RHAMNOSE (RAMa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
4
GLC
6
Ligand/Ion
ALPHA-D-GLUCOSE
5
GOL
21
Ligand/Ion
GLYCEROL
6
K
-1
Ligand/Ion
POTASSIUM ION
7
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
RAM
3
Ligand/Ion
ALPHA-L-RHAMNOSE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:211 , RAM A:720 , HOH A:2137 , HOH A:2138 , HOH A:2203 , HOH A:2250 , HOH A:2719
BINDING SITE FOR RESIDUE CA A 710
02
AC2
SOFTWARE
SER A:596 , TYR A:597 , ASN A:625
BINDING SITE FOR RESIDUE CL A 711
03
AC3
SOFTWARE
HIS A:212 , SER A:213 , GLN A:242 , RAM A:720
BINDING SITE FOR RESIDUE K A 712
04
AC4
SOFTWARE
ARG A:140 , ASP A:144 , HOH A:2026 , HOH A:2048 , HOH A:2704
BINDING SITE FOR RESIDUE GOL A 713
05
AC5
SOFTWARE
TYR A:409 , ASN A:440 , ASP A:441 , SER A:450 , HOH A:2444 , HOH A:2446 , HOH A:2706 , HOH A:2707 , HOH A:2708
BINDING SITE FOR RESIDUE GOL A 714
06
AC6
SOFTWARE
ASN A:569 , GLU A:579 , TYR A:597 , ASP A:670 , ARG A:697 , HOH A:2564 , HOH A:2666 , HOH A:2670 , HOH A:2691
BINDING SITE FOR RESIDUE GOL A 715
07
AC7
SOFTWARE
TYR A:131 , ASP A:147 , GLU A:148 , ARG A:149 , VAL A:150 , GLY A:189 , THR A:190 , HOH A:2108 , HOH A:2709
BINDING SITE FOR RESIDUE GOL A 716
08
AC8
SOFTWARE
LYS A:608 , SER A:664 , ILE A:665 , GLU A:667 , ARG A:707 , GLN A:708 , HOH A:2710 , HOH A:2711
BINDING SITE FOR RESIDUE GOL A 717
09
AC9
SOFTWARE
THR A:633 , SER A:700 , ARG A:702 , HOH A:2602 , HOH A:2698 , HOH A:2713
BINDING SITE FOR RESIDUE GOL A 718
10
BC1
SOFTWARE
ASP A:541 , LYS A:542 , ASN A:544 , GLU A:573 , GLN A:575 , HOH A:2534 , HOH A:2567 , HOH A:2569 , HOH A:2714 , HOH A:2715
BINDING SITE FOR RESIDUE GOL A 719
11
BC2
SOFTWARE
GLY A:211 , HIS A:212 , GLN A:242 , LEU A:282 , THR A:307 , TRP A:308 , THR A:311 , TRP A:314 , ASN A:315 , SER A:335 , ASP A:339 , SER A:341 , TYR A:344 , ASN A:346 , GLU A:372 , TYR A:393 , VAL A:395 , HIS A:397 , GLU A:400 , LEU A:427 , GLY A:428 , ASP A:430 , GLY A:468 , PRO A:469 , ASP A:470 , ASN A:471 , CA A:710 , K A:712 , HOH A:2138 , HOH A:2194 , HOH A:2203 , HOH A:2250 , HOH A:2302 , HOH A:2342 , HOH A:2403 , HOH A:2461 , HOH A:2468 , HOH A:2717 , HOH A:2718 , HOH A:2720 , HOH A:2721 , HOH A:2722 , HOH A:2723 , HOH A:2724 , HOH A:2725 , HOH A:2727 , HOH A:2728 , HOH A:2730 , HOH A:2731
BINDING SITE FOR POLY-SACCHARIDE RESIDUES RAM A 720 THROUGH GLC A 725
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Head_binding_2vjjA01 (A:112-114)
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Clan
:
no clan defined [family: Head_binding]
(4)
Family
:
Head_binding
(4)
Enterobacteria phage HK620 (Bacteriophage HK620)
(4)
1a
Head_binding-2vjjA01
A:112-114
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Chain A
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