2VE8 - JenaLib

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Title :   XRAY STRUCTURE OF FTSK GAMMA DOMAIN (P. AERUGINOSA)

Authors :   J. Lowe, M. A. Allen, D. J. Sherratt

Date :   17 Oct 07 (Deposition) - 09 Sep 08 (Release) - 25 Jan 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Nucleotide-Binding, Chromosome Partition, Atp-Binding, Dna-Binding, Translocase, Winged Helix, Bacterial Cell Division, Transport Protein, Cell Division, Transmembrane, Inner Membrane, Ftsz, Ftsk, Membrane, Cell Cycle, Dna Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Lowe, A. Ellonen, M. D. Allen, C. Atkinson, D. J. Sherratt, I. Grainge
Molecular Mechanism Of Sequence-Directed Dna Loading And Translocation By Ftsk.
Mol. Cell V. 31 498 2008
PubMed-ID: 18722176 | Reference-DOI: 10.1016/J.MOLCEL.2008.05.027

Molecule 1 - DNA TRANSLOCASE FTSK
	Atcc	:	47085
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	GAMMA DOMAIN, RESIDUES 739-811
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	FTSK

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2VE8)

(no "Site" information available for 2VE8)

(no "SS Bond" information available for 2VE8)

(no "Cis Peptide Bond" information available for 2VE8)

(no "SAP(SNP)/Variant" information available for 2VE8)

(no "PROSITE Motif" information available for 2VE8)

(no "Exon" information available for 2VE8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:67
                                   754       764       774       784       794       804       
           FTSK_PSEAE   745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 811
               SCOP domains d2ve8a_ A: automated matches                                        SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 2ve8 A 745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 811
                                   754       764       774       784       794       804

Chain B from PDB  Type:PROTEIN  Length:65
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:65
                                   754       764       774       784       794       804     
           FTSK_PSEAE   745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
               SCOP domains d2ve8b_ B: automated matches                                      SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                 2ve8 B 745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
                                   754       764       774       784       794       804

Chain C from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:65
                                   755       765       775       785       795       805     
           FTSK_PSEAE   746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 810
               SCOP domains d2ve8c_ C: automated matches                                      SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.......--............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                 2ve8 C 746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMN--GSREVIAPAPVR 810
                                   755       765       775       785       795|  |   805     
                                                                            796  |           
                                                                               799

Chain D from PDB  Type:PROTEIN  Length:68
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:68
                                   753       763       773       783       793       803        
           FTSK_PSEAE   744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 811
               SCOP domains d2ve8d_ D: automated matches                                         SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 2ve8 D 744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 811
                                   753       763       773       783       793       803

Chain E from PDB  Type:PROTEIN  Length:67
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:67
                                   753       763       773       783       793       803       
           FTSK_PSEAE   744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 810
               SCOP domains d2ve8e_ E: automated matches                                        SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 2ve8 E 744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 810
                                   753       763       773       783       793       803

Chain F from PDB  Type:PROTEIN  Length:66
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:66
                                   753       763       773       783       793       803      
           FTSK_PSEAE   744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
               SCOP domains d2ve8f_ F: automated matches                                       SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 2ve8 F 744 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
                                   753       763       773       783       793       803

Chain G from PDB  Type:PROTEIN  Length:61
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:61
                                   756       766       776       786       796       806 
           FTSK_PSEAE   747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPA 807
               SCOP domains d2ve8g_ G: automated matches                                  SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 2ve8 G 747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPA 807
                                   756       766       776       786       796       806

Chain H from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:63
                                   756       766       776       786       796       806   
           FTSK_PSEAE   747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
               SCOP domains d2ve8h_ H: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
           Pfam domains (1) Ftsk_gamma-2ve8H01 H:747-808                                  - Pfam domains (1)
           Pfam domains (2) Ftsk_gamma-2ve8H02 H:747-808                                  - Pfam domains (2)
           Pfam domains (3) Ftsk_gamma-2ve8H03 H:747-808                                  - Pfam domains (3)
           Pfam domains (4) Ftsk_gamma-2ve8H04 H:747-808                                  - Pfam domains (4)
           Pfam domains (5) Ftsk_gamma-2ve8H05 H:747-808                                  - Pfam domains (5)
           Pfam domains (6) Ftsk_gamma-2ve8H06 H:747-808                                  - Pfam domains (6)
           Pfam domains (7) Ftsk_gamma-2ve8H07 H:747-808                                  - Pfam domains (7)
           Pfam domains (8) Ftsk_gamma-2ve8H08 H:747-808                                  - Pfam domains (8)
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 2ve8 H 747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
                                   756       766       776       786       796       806

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: FtsK C-terminal domain-like (4)

Protein domain: automated matches (2)

Pseudomonas aeruginosa [TaxId: 287] (2)

1a	d2ve8a_	A:
1b	d2ve8b_	B:
1c	d2ve8c_	C:
1d	d2ve8d_	D:
1e	d2ve8e_	E:
1f	d2ve8f_	F:
1g	d2ve8g_	G:
1h	d2ve8h_	H:

(no "CATH Domain" information available for 2VE8)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HTH (544)

Family: Ftsk_gamma (2)

Pseudomonas aeruginosa (2)

1a	Ftsk_gamma-2ve8H01	H:747-808
1b	Ftsk_gamma-2ve8H02	H:747-808
1c	Ftsk_gamma-2ve8H03	H:747-808
1d	Ftsk_gamma-2ve8H04	H:747-808
1e	Ftsk_gamma-2ve8H05	H:747-808
1f	Ftsk_gamma-2ve8H06	H:747-808
1g	Ftsk_gamma-2ve8H07	H:747-808
1h	Ftsk_gamma-2ve8H08	H:747-808

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (FTSK_PSEAE | Q9I0M3)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0071236	cellular response to antibiotic	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0007059	chromosome segregation	The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	2ve8
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	FTSK_PSEAE \| Q9I0M3
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UniProtKB/Swiss-Prot
	FTSK_PSEAE \| Q9I0M3	:	2iut 2iuu 2j5o 2ve9

2iut	P. AERUGINOSA FTSK MOTOR DOMAIN, DIMERIC
2iuu	P. AERUGINOSA FTSK MOTOR DOMAIN, HEXAMER
2j5o	PSEUDOMONAS AERUGINOSA FTSK GAMMA DOMAIN
2ve9	XRAY STRUCTURE OF KOPS BOUND GAMMA DOMAIN OF FTSK (P. AERUGINOSA)

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