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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   P. AERUGINOSA FTSK MOTOR DOMAIN, DIMERIC

Authors :   T. H. Massey, C. P. Mercogliano, J. Yates, D. J. Sherratt, J. Lowe

Date :   07 Jun 06 (Deposition) - 29 Aug 06 (Release) - 30 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym./Biol. Unit : A,B

Keywords :   Nucleotide-Binding, Chromosome Partition, Atp-Binding, Dna- Binding, Cell Division, Dna Translocation, Kops, Membrane, Divisome, Cell Cycle, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. H. Massey, C. P. Mercogliano, J. Yates, D. J. Sherratt, J. Lowe
Double-Stranded Dna Translocation: Structure And Mechanism Of Hexameric Ftsk
Mol. Cell V. 23 457 2006
PubMed-ID: 16916635 | Reference-DOI: 10.1016/J.MOLCEL.2006.06.019

Molecule 1 - DNA TRANSLOCASE FTSK
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	MOTOR DOMAIN, RESIDUES 247-811
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	FTSK MOTOR DOMAIN

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	AGS	2	Ligand/Ion	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:473 , GLU A:503 , AGS A:1723 , HOH A:2070 , HOH A:2080 , HOH A:2169	BINDING SITE FOR RESIDUE MG A1724
2	AC2	SOFTWARE	SER B:473 , GLU B:503 , AGS B:1724 , HOH B:2074 , HOH B:2082 , HOH B:2189	BINDING SITE FOR RESIDUE MG B1723
3	AC3	SOFTWARE	THR A:467 , THR A:468 , GLY A:469 , SER A:470 , GLY A:471 , LYS A:472 , SER A:473 , VAL A:474 , GLU A:503 , HIS A:675 , GLY A:676 , GLY A:693 , ALA A:694 , PHE A:695 , MG A:1724 , HOH A:2068 , HOH A:2169 , HOH A:2170 , HOH A:2171 , HOH A:2172 , ALA B:393 , VAL B:394 , ILE B:395 , GLU B:416 , ARG B:418 , HOH B:2032 , HOH B:2034	BINDING SITE FOR RESIDUE AGS A1723
4	AC4	SOFTWARE	ALA A:393 , VAL A:394 , ILE A:395 , GLU A:416 , ARG A:418 , HOH A:2029 , HOH A:2030 , MET B:420 , THR B:467 , THR B:468 , GLY B:469 , SER B:470 , GLY B:471 , LYS B:472 , SER B:473 , VAL B:474 , GLU B:503 , HIS B:675 , GLY B:676 , GLY B:693 , PHE B:695 , MG B:1723 , HOH B:2052 , HOH B:2187 , HOH B:2189 , HOH B:2190 , HOH B:2191 , HOH B:2192 , HOH B:2193	BINDING SITE FOR RESIDUE AGS B1724

(no "SS Bond" information available for 2IUT)

Asymmetric/Biological Unit

No.	Residues
1	Met A:459	-	Pro A:460
2	Met B:459	-	Pro B:460

(no "SAP(SNP)/Variant" information available for 2IUT)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSK	PS50901	FtsK domain profile.	FTSK_PSEAE	449-661	2	A:449-661 B:449-661

(no "Exon" information available for 2IUT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:409
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:409
                                   324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714         
           FTSK_PSEAE   315 LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAG 723
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..........hhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee......hhhhhhhhhhhhhhhhh....eee........eeeeee.......hhhhhhhhhhhhh.....eeeeeee....eeeee.hhh..eeee.....hhhhhhhhhhhhhhh......eeeeee...hhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.........................eeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeeee........hhhhhhh..eeeee...hhhhhhhhhh..hhhhh....eeeee.......eeeee...hhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------FTSK  PDB: A:449-661 UniProt: 449-661                                                                                                                                                                                -------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iut A 315 LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAG 723
                                   324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714

Chain B from PDB  Type:PROTEIN  Length:409
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:409
                                   324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714         
           FTSK_PSEAE   315 LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAG 723
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..........hhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeee......hhhhhhhhhhhhhhhhh....eee........eeeeee.......hhhhhhhhhhhhh.....eeeeeee....eeeee.hhh..eeee.....hhhhhhhhhhhhhhh......eeeeee...hhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.........................eeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeeee........hhhhhhh..eeeee...hhhhhhhhhh..hhhhh....eeeee.......eeeee...hhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------FTSK  PDB: B:449-661 UniProt: 449-661                                                                                                                                                                                -------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iut B 315 LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAG 723
                                   324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2IUT)

(no "CATH Domain" information available for 2IUT)

(no "Pfam Domain" information available for 2IUT)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (FTSK_PSEAE | Q9I0M3)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0071236	cellular response to antibiotic	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0007059	chromosome segregation	The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Met A:459 - Pro A:460	[ RasMol ]
		Met B:459 - Pro B:460	[ RasMol ]

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	FTSK_PSEAE \| Q9I0M3	:	2iuu 2j5o 2ve8 2ve9

2ius	E. COLI FTSK MOTOR DOMAIN
2iuu	P. AERUGINOSA FTSK MOTOR DOMAIN, HEXAMER

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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