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(-) Description

Title :  XRAY STRUCTURE OF KOPS BOUND GAMMA DOMAIN OF FTSK (P. AERUGINOSA)
 
Authors :  J. Lowe, M. D. Allen, D. J. Sherratt
Date :  17 Oct 07  (Deposition) - 09 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,I,J,K,L
Biol. Unit 1:  A,B,C,I,J  (1x)
Biol. Unit 2:  D,E,F,K,L  (1x)
Keywords :  Nucleotide-Binding, Chromosome Partition, Atp-Binding, Dna-Binding, Translocase, Winged Helix, Bacterial Cell Division, Transport Protein, Cell Division, Transmembrane, Inner Membrane, Ftsz, Ftsk, Membrane, Cell Cycle, Dna Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Lowe, A. Ellonen, M. D. Allen, C. Atkinson, D. J. Sherratt, I. Graing
Molecular Mechanism Of Sequence-Directed Dna Loading And Translocation By Ftsk.
Mol. Cell V. 31 498 2008
PubMed-ID: 18722176  |  Reference-DOI: 10.1016/J.MOLCEL.2008.05.027

(-) Compounds

Molecule 1 - DNA TRANSLOCASE FTSK
    Atcc: 47085
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: GAMMA DOMAIN, RESIDUES 739-811
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: FTSK
 
Molecule 2 - 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3'
    Atcc: 47085
    Chains: I, K
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synthetic: YES
 
Molecule 3 - 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3'
    Atcc: 47085
    Chains: J, L
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFIJKL
Biological Unit 1 (1x): ABC   IJ  
Biological Unit 2 (1x):    DEF  KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH K:2013 , HOH K:2023 , DT L:13 , DG L:14 , HOH L:2032 , HOH L:2035BINDING SITE FOR RESIDUE MG L1017

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VE9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VE9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VE9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VE9)

(-) Exons   (0, 0)

(no "Exon" information available for 2VE9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:63
                                   755       765       775       785       795       805   
           FTSK_PSEAE   746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
               SCOP domains d2ve9a_ A: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 2ve9 A 746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
                                   755       765       775       785       795       805   


Chain B from PDB  Type:PROTEIN  Length:62
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:62
                                   756       766       776       786       796       806  
           FTSK_PSEAE   747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
               SCOP domains d2ve9b_ B: automated matches                                   SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 2ve9 B 747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
                                   756       766       776       786       796       806  


Chain C from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:63
                                   755       765       775       785       795       805   
           FTSK_PSEAE   746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
               SCOP domains d2ve9c_ C: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 2ve9 C 746 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
                                   755       765       775       785       795       805   


Chain D from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:63
                                   756       766       776       786       796       806   
           FTSK_PSEAE   747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
               SCOP domains d2ve9d_ D: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 2ve9 D 747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
                                   756       766       776       786       796       806   


Chain E from PDB  Type:PROTEIN  Length:63
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:63
                                   756       766       776       786       796       806   
           FTSK_PSEAE   747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
               SCOP domains d2ve9e_ E: automated matches                                    SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 2ve9 E 747 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPV 809
                                   756       766       776       786       796       806   


Chain F from PDB  Type:PROTEIN  Length:64
 aligned with FTSK_PSEAE | Q9I0M3 from UniProtKB/Swiss-Prot  Length:811

    Alignment length:64
                                   754       764       774       784       794       804    
           FTSK_PSEAE   745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
               SCOP domains d2ve9f_ F: automated matches                                     SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
           Pfam domains (1) Ftsk_gamma-2ve9F01 F:745-808                                     Pfam domains (1)
           Pfam domains (2) Ftsk_gamma-2ve9F02 F:745-808                                     Pfam domains (2)
           Pfam domains (3) Ftsk_gamma-2ve9F03 F:745-808                                     Pfam domains (3)
           Pfam domains (4) Ftsk_gamma-2ve9F04 F:745-808                                     Pfam domains (4)
           Pfam domains (5) Ftsk_gamma-2ve9F05 F:745-808                                     Pfam domains (5)
           Pfam domains (6) Ftsk_gamma-2ve9F06 F:745-808                                     Pfam domains (6)
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2ve9 F 745 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAP 808
                                   754       764       774       784       794       804    


Chain I from PDB  Type:DNA  Length:14
                                              
                 2ve9 I   1 ACCAGGGCAGGGCG  14
                                    10    


Chain J from PDB  Type:DNA  Length:16
                                                
                 2ve9 J   1 GTCGCCCTGCCCTGGT  16
                                    10      


Chain K from PDB  Type:DNA  Length:14
                                              
                 2ve9 K   1 ACCAGGGCAGGGCG  14
                                    10    


Chain L from PDB  Type:DNA  Length:16
                                                
                 2ve9 L   1 GTCGCCCTGCCCTGGT  16
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VE9)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: HTH (544)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FTSK_PSEAE | Q9I0M3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0071236    cellular response to antibiotic    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSK_PSEAE | Q9I0M3: 2iut 2iuu 2j5o 2ve8

(-) Related Entries Specified in the PDB File

2iut P. AERUGINOSA FTSK MOTOR DOMAIN, DIMERIC
2iuu P. AERUGINOSA FTSK MOTOR DOMAIN, HEXAMER
2j5o PSEUDOMONAS AERUGINOSA FTSK GAMMA DOMAIN
2ve8 XRAY STRUCTURE OF FTSK GAMMA DOMAIN (P. AERUGINOSA)