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(-) Description

Title :  PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN
 
Authors :  J. A. Chao
Date :  06 Aug 07  (Deposition) - 18 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Biol. Unit 5:  M,N,O  (1x)
Biol. Unit 6:  P,Q,R  (1x)
Keywords :  Bacteriophage Coat Protein, Rna-Protein Complex, Capsid Protein, Structural Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Chao, Y. Patskovsky, S. C. Almo, R. H. Singer
Structural Basis For The Coevolution Of A Viral Rna-Protein Complex.
Nat. Struct. Mol. Biol. V. 15 103 2008
PubMed-ID: 18066080  |  Reference-DOI: 10.1038/NSMB1327

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, D, E, G, H, J, K, M, N, P, Q
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET22HT
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PP7 COAT PROTEIN
    Organism Scientific: PSEUDOMONAS PHAGE PP7
    Organism Taxid: 12023
 
Molecule 2 - RNA (25-MER)
    Chains: C, F, I, L, O, R
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112131415161718
Asymmetric Unit : ABCDEFGHIJKLMNOPQR
Biological Unit 1 (1x): ABC               
Biological Unit 2 (1x):    DEF            
Biological Unit 3 (1x):       GHI         
Biological Unit 4 (1x):          JKL      
Biological Unit 5 (1x):             MNO   
Biological Unit 6 (1x):                PQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric Unit (1, 15)
No.NameCountTypeFull Name
1GOL15Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:4 , VAL A:5 , THR B:112 , SER B:113 , GLN B:114 , ARG B:127 , HOH B:159 , ALA K:22BINDING SITE FOR RESIDUE GOL B 128
02AC2SOFTWAREILE D:4 , VAL D:5 , THR E:112 , SER E:113 , GLN E:114 , HOH E:158 , HOH E:161 , HOH E:172BINDING SITE FOR RESIDUE GOL E 128
03AC3SOFTWARETHR A:112 , SER A:113 , GLN A:114 , GOL A:129 , HOH A:155 , HOH A:166 , ILE B:4 , VAL B:5BINDING SITE FOR RESIDUE GOL A 128
04AC4SOFTWAREVAL G:5 , SER H:113 , GLN H:114 , HOH H:143BINDING SITE FOR RESIDUE GOL H 128
05AC5SOFTWAREGLU D:28 , LEU D:34 , ARG D:39 , TYR G:53BINDING SITE FOR RESIDUE GOL D 128
06AC6SOFTWAREILE J:4 , VAL J:5 , THR K:112 , SER K:113 , GLN K:114 , HOH K:147BINDING SITE FOR RESIDUE GOL K 128
07AC7SOFTWARELYS P:58 , ASP P:60 , VAL P:83 , A R:6BINDING SITE FOR RESIDUE GOL R 26
08AC8SOFTWARETHR J:112 , SER J:113 , GLN J:114 , ILE K:4 , VAL K:5BINDING SITE FOR RESIDUE GOL J 128
09AC9SOFTWAREASP B:23 , ARG B:24 , GLN B:25 , LEU B:44BINDING SITE FOR RESIDUE GOL B 129
10BC1SOFTWAREGLY G:32 , PRO G:33 , ASP G:66 , SER J:94 , THR J:95 , GLU J:96 , ARG J:99BINDING SITE FOR RESIDUE GOL J 129
11BC2SOFTWAREGLN A:114 , ASP A:117 , ARG A:127 , GOL A:128 , ALA E:97BINDING SITE FOR RESIDUE GOL A 129
12BC3SOFTWAREPRO D:33 , ASP D:66 , PRO D:76 , ASN G:93 , SER G:94 , THR G:95 , GLU G:96BINDING SITE FOR RESIDUE GOL G 128
13BC4SOFTWARETHR D:112 , SER D:113 , GLN D:114 , VAL E:5BINDING SITE FOR RESIDUE GOL D 129
14BC5SOFTWAREARG J:45 , G L:10 , A L:11BINDING SITE FOR RESIDUE GOL L 26
15BC6SOFTWAREARG G:45 , ASN G:47 , ARG G:54 , A I:11 , U I:12BINDING SITE FOR RESIDUE GOL I 26

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QUX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QUX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QUX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QUX)

(-) Exons   (0, 0)

(no "Exon" information available for 2QUX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:129
                              1                                                                                                                              
                              |      8        18        28        38        48        58        68        78        88        98       108       118         
           COAT_BPPP7     - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxa_ A: automated matches                                                                                                      SCOP domains
               CATH domains 2quxA00 A:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux A  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain A from PDB  Type:PROTEIN  Length:123
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:129
                             1                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119         
         Q38062_BPPP7     - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxa_ A: automated matches                                                                                                      SCOP domains
               CATH domains 2quxA00 A:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux A  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:127
                                    10        20        30        40        50        60        70        80        90       100       110       120       
           COAT_BPPP7     1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxb_ B: automated matches                                                                                                    SCOP domains
               CATH domains 2quxB00 B:1-127 MS2 Viral Coat Protein                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux B   1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20        30        40        50        60       | -    |   80        90       100       110       120       
                                                                                              68     75                                                    


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxb_ B: automated matches                                                                                                    SCOP domains
               CATH domains 2quxB00 B:1-127 MS2 Viral Coat Protein                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux B   1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20        30        40        50        60       | -    |   80        90       100       110       120       
                                                                                              68     75                                                    


Chain C from PDB  Type:RNA  Length:25
                                                         
                 2qux C   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20     


Chain D from PDB  Type:PROTEIN  Length:122
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:128
                             1                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119        
           COAT_BPPP7     - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxd_ D: automated matches                                                                                                     SCOP domains
               CATH domains 2quxD00 D:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee......eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux D   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain D from PDB  Type:PROTEIN  Length:122
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:128
                                    10        20        30        40        50        60        70        80        90       100       110       120        
         Q38062_BPPP7     1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxd_ D: automated matches                                                                                                     SCOP domains
               CATH domains 2quxD00 D:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeee......eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux D   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain E from PDB  Type:PROTEIN  Length:122
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:128
                             1                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119        
           COAT_BPPP7     - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxe_ E: automated matches                                                                                                     SCOP domains
               CATH domains 2quxE00 E:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux E   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain E from PDB  Type:PROTEIN  Length:122
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:128
                                    10        20        30        40        50        60        70        80        90       100       110       120        
         Q38062_BPPP7     1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxe_ E: automated matches                                                                                                     SCOP domains
               CATH domains 2quxE00 E:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux E   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain F from PDB  Type:RNA  Length:25
                                                         
                 2qux F   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20     


Chain G from PDB  Type:PROTEIN  Length:123
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:129
                              1                                                                                                                              
                              |      8        18        28        38        48        58        68        78        88        98       108       118         
           COAT_BPPP7     - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxg_ G: automated matches                                                                                                      SCOP domains
               CATH domains 2quxG00 G:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux G  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain G from PDB  Type:PROTEIN  Length:123
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:129
                             1                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119         
         Q38062_BPPP7     - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxg_ G: automated matches                                                                                                      SCOP domains
               CATH domains 2quxG00 G:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux G  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain H from PDB  Type:PROTEIN  Length:119
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:127
                                    10        20        30        40        50        60        70        80        90       100       110       120       
           COAT_BPPP7     1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxh_ H: automated   matches                                                                                                  SCOP domains
               CATH domains 2quxH00 H:1-127 MS2 V  iral Coat Protein                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux H   1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20|  |    30        40        50        60       | -    |   80        90       100       110       120       
                                               21 24                                          68     75                                                    


Chain H from PDB  Type:PROTEIN  Length:119
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxh_ H: automated   matches                                                                                                  SCOP domains
               CATH domains 2quxH00 H:1-127 MS2 V  iral Coat Protein                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux H   1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20|  |    30        40        50        60       | -    |   80        90       100       110       120       
                                               21 24                                          68     75                                                    


Chain I from PDB  Type:RNA  Length:25
                                                         
                 2qux I   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20     


Chain J from PDB  Type:PROTEIN  Length:123
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:129
                              1                                                                                                                              
                              |      8        18        28        38        48        58        68        78        88        98       108       118         
           COAT_BPPP7     - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxj_ J: automated matches                                                                                                      SCOP domains
               CATH domains 2quxJ00 J:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux J  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain J from PDB  Type:PROTEIN  Length:123
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:129
                             1                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119         
         Q38062_BPPP7     - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxj_ J: automated matches                                                                                                      SCOP domains
               CATH domains 2quxJ00 J:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux J  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58        68      | 78        88        98       108       118         
                                                                                                68     75                                                    


Chain K from PDB  Type:PROTEIN  Length:122
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:129
                              1                                                                                                                              
                              |      8        18        28        38        48        58        68        78        88        98       108       118         
           COAT_BPPP7     - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxk_ K: automated matches                                                                                                      SCOP domains
               CATH domains 2quxK00 K:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee-..------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux K  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV-SG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58      | 68      | 78        88        98       108       118         
                                                                                             65 ||     75                                                    
                                                                                               67|                                                           
                                                                                                68                                                           


Chain K from PDB  Type:PROTEIN  Length:122
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:129
                             1                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119         
         Q38062_BPPP7     - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxk_ K: automated matches                                                                                                      SCOP domains
               CATH domains 2quxK00 K:-1-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee-..------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux K  -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV-SG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     8        18        28        38        48        58      | 68      | 78        88        98       108       118         
                                                                                             65 ||     75                                                    
                                                                                               67|                                                           
                                                                                                68                                                           


Chain L from PDB  Type:RNA  Length:25
                                                         
                 2qux L   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20     


Chain M from PDB  Type:PROTEIN  Length:119
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:125
                                    12        22        32        42        52        62        72        82        92       102       112       122     
           COAT_BPPP7     3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxm_ M: automated matches                                                                                                  SCOP domains
               CATH domains 2quxM00 M:3-127 MS2 Viral Coat Protein                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux M   3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    12        22        32        42        52        62     |   -  |     82        92       102       112       122     
                                                                                            68     75                                                    


Chain M from PDB  Type:PROTEIN  Length:119
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:125
                                    13        23        33        43        53        63        73        83        93       103       113       123     
         Q38062_BPPP7     4 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxm_ M: automated matches                                                                                                  SCOP domains
               CATH domains 2quxM00 M:3-127 MS2 Viral Coat Protein                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux M   3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    12        22        32        42        52        62     |   -  |     82        92       102       112       122     
                                                                                            68     75                                                    


Chain N from PDB  Type:PROTEIN  Length:119
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:127
                                    10        20        30        40        50        60        70        80        90       100       110       120       
           COAT_BPPP7     1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxn_ N: automated   matches                                                                                                  SCOP domains
               CATH domains 2quxN00 N:1-127 MS2 V  iral Coat Protein                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux N   1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20|  |    30        40        50        60       | -    |   80        90       100       110       120       
                                               21 24                                          68     75                                                    


Chain N from PDB  Type:PROTEIN  Length:119
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxn_ N: automated   matches                                                                                                  SCOP domains
               CATH domains 2quxN00 N:1-127 MS2 V  iral Coat Protein                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux N   1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20|  |    30        40        50        60       | -    |   80        90       100       110       120       
                                               21 24                                          68     75                                                    


Chain O from PDB  Type:RNA  Length:25
                                                         
                 2qux O   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20     


Chain P from PDB  Type:PROTEIN  Length:122
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:128
                             1                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119        
           COAT_BPPP7     - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxp_ P: automated matches                                                                                                     SCOP domains
               CATH domains 2quxP00 P:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux P   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain P from PDB  Type:PROTEIN  Length:122
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:128
                                    10        20        30        40        50        60        70        80        90       100       110       120        
         Q38062_BPPP7     1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxp_ P: automated matches                                                                                                     SCOP domains
               CATH domains 2quxP00 P:0-127 MS2 Viral Coat Protein                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux P   0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                     9        19        29        39        49        59        |-     |  79        89        99       109       119        
                                                                                               68     75                                                    


Chain Q from PDB  Type:PROTEIN  Length:117
 aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:127
                                    10        20        30        40        50        60        70        80        90       100       110       120       
           COAT_BPPP7     1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
               SCOP domains d2quxq_ Q: automated  matches                                                                                                   SCOP domains
               CATH domains 2quxQ00 Q:1-127 MS2 V iral Coat Protein                                                                                         CATH domains
           Pfam domains (1) Phage_coat-2quxQ01 Q: 1-127                                                                                                     Pfam domains (1)
           Pfam domains (2) Phage_coat-2quxQ02 Q: 1-127                                                                                                     Pfam domains (2)
           Pfam domains (3) Phage_coat-2quxQ03 Q: 1-127                                                                                                     Pfam domains (3)
           Pfam domains (4) Phage_coat-2quxQ04 Q: 1-127                                                                                                     Pfam domains (4)
           Pfam domains (5) Phage_coat-2quxQ05 Q: 1-127                                                                                                     Pfam domains (5)
           Pfam domains (6) Phage_coat-2quxQ06 Q: 1-127                                                                                                     Pfam domains (6)
           Pfam domains (7) Phage_coat-2quxQ07 Q: 1-127                                                                                                     Pfam domains (7)
           Pfam domains (8) Phage_coat-2quxQ08 Q: 1-127                                                                                                     Pfam domains (8)
           Pfam domains (9) Phage_coat-2quxQ09 Q: 1-127                                                                                                     Pfam domains (9)
          Pfam domains (10) Phage_coat-2quxQ10 Q: 1-127                                                                                                     Pfam domains (10)
          Pfam domains (11) Phage_coat-2quxQ11 Q: 1-127                                                                                                     Pfam domains (11)
          Pfam domains (12) Phage_coat-2quxQ12 Q: 1-127                                                                                                     Pfam domains (12)
         Sec.struct. author ..eeeeee..eeeeeeeee..-.eeeee..........eeeeeeee.....eeeeeeeeeee..---.------......eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux Q   1 SKTIVLSVGEATRTLTEIQST-DRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADV---G------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20| |     30        40        50        60   |   | -    |   80        90       100       110       120       
                                               21 |                                       64  68     75                                                    
                                                 23                                                                                                        


Chain Q from PDB  Type:PROTEIN  Length:117
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d2quxq_ Q: automated  matches                                                                                                   SCOP domains
               CATH domains 2quxQ00 Q:1-127 MS2 V iral Coat Protein                                                                                         CATH domains
           Pfam domains (1) Phage_coat-2quxQ01 Q: 1-127                                                                                                     Pfam domains (1)
           Pfam domains (2) Phage_coat-2quxQ02 Q: 1-127                                                                                                     Pfam domains (2)
           Pfam domains (3) Phage_coat-2quxQ03 Q: 1-127                                                                                                     Pfam domains (3)
           Pfam domains (4) Phage_coat-2quxQ04 Q: 1-127                                                                                                     Pfam domains (4)
           Pfam domains (5) Phage_coat-2quxQ05 Q: 1-127                                                                                                     Pfam domains (5)
           Pfam domains (6) Phage_coat-2quxQ06 Q: 1-127                                                                                                     Pfam domains (6)
           Pfam domains (7) Phage_coat-2quxQ07 Q: 1-127                                                                                                     Pfam domains (7)
           Pfam domains (8) Phage_coat-2quxQ08 Q: 1-127                                                                                                     Pfam domains (8)
           Pfam domains (9) Phage_coat-2quxQ09 Q: 1-127                                                                                                     Pfam domains (9)
          Pfam domains (10) Phage_coat-2quxQ10 Q: 1-127                                                                                                     Pfam domains (10)
          Pfam domains (11) Phage_coat-2quxQ11 Q: 1-127                                                                                                     Pfam domains (11)
          Pfam domains (12) Phage_coat-2quxQ12 Q: 1-127                                                                                                     Pfam domains (12)
         Sec.struct. author ..eeeeee..eeeeeeeee..-.eeeee..........eeeeeeee.....eeeeeeeeeee..---.------......eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qux Q   1 SKTIVLSVGEATRTLTEIQST-DRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADV---G------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20| |     30        40        50        60   |   | -    |   80        90       100       110       120       
                                               21 |                                       64  68     75                                                    
                                                 23                                                                                                        


Chain R from PDB  Type:RNA  Length:25
                                                         
                 2qux R   1 GGCACAGAAGAUAUGGCUUCGUGCC  25
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: MS2 Viral Coat Protein (42)
(-)
Homologous Superfamily: MS2 Viral Coat Protein (42)
(-)
Pseudomonas phage pp7. Organism_taxid: 12023. (2)
1a2quxA00A:-1-127
1b2quxH00H:1-127
1c2quxM00M:3-127
1d2quxN00N:1-127
1e2quxQ00Q:1-127
1f2quxG00G:-1-127
1g2quxJ00J:-1-127
1h2quxD00D:0-127
1i2quxE00E:0-127
1j2quxK00K:-1-127
1k2quxP00P:0-127
1l2quxB00B:1-127

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: Phage_coat] (2)

(-) Gene Ontology  (4, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E,G,H,J,K,M,N,P,Q   (Q38062_BPPP7 | Q38062)
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

Chain A,B,D,E,G,H,J,K,M,N,P,Q   (COAT_BPPP7 | P03630)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
cellular component
    GO:0039617    T=3 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  2qux
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  COAT_BPPP7 | P03630
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  Q38062_BPPP7 | Q38062
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  COAT_BPPP7 | P03630
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  Q38062_BPPP7 | Q38062
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAT_BPPP7 | P03630: 2qud
        Q38062_BPPP7 | Q38062: 2qud
UniProtKB/TrEMBL
        Q38062_BPPP7 | Q38062: 1dwn

(-) Related Entries Specified in the PDB File

1dwn PP7 CAPSID
2qud PP7 COAT PROTEIN DIMER