Chain A from PDB Type:PROTEIN Length:123
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:129
1
| 8 18 28 38 48 58 68 78 88 98 108 118
COAT_BPPP7 - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxa_ A: automated matches SCOP domains
CATH domains 2quxA00 A:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux A -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain A from PDB Type:PROTEIN Length:123
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:129
1
| 9 19 29 39 49 59 69 79 89 99 109 119
Q38062_BPPP7 - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxa_ A: automated matches SCOP domains
CATH domains 2quxA00 A:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux A -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain B from PDB Type:PROTEIN Length:121
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:127
10 20 30 40 50 60 70 80 90 100 110 120
COAT_BPPP7 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxb_ B: automated matches SCOP domains
CATH domains 2quxB00 B:1-127 MS2 Viral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux B 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20 30 40 50 60 | - | 80 90 100 110 120
68 75
Chain B from PDB Type:PROTEIN Length:121
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
Q38062_BPPP7 2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxb_ B: automated matches SCOP domains
CATH domains 2quxB00 B:1-127 MS2 Viral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux B 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20 30 40 50 60 | - | 80 90 100 110 120
68 75
Chain C from PDB Type:RNA Length:25
2qux C 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Chain D from PDB Type:PROTEIN Length:122
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:128
1
| 9 19 29 39 49 59 69 79 89 99 109 119
COAT_BPPP7 - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxd_ D: automated matches SCOP domains
CATH domains 2quxD00 D:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeee......eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux D 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain D from PDB Type:PROTEIN Length:122
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:128
10 20 30 40 50 60 70 80 90 100 110 120
Q38062_BPPP7 1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxd_ D: automated matches SCOP domains
CATH domains 2quxD00 D:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeee......eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux D 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain E from PDB Type:PROTEIN Length:122
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:128
1
| 9 19 29 39 49 59 69 79 89 99 109 119
COAT_BPPP7 - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxe_ E: automated matches SCOP domains
CATH domains 2quxE00 E:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux E 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain E from PDB Type:PROTEIN Length:122
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:128
10 20 30 40 50 60 70 80 90 100 110 120
Q38062_BPPP7 1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxe_ E: automated matches SCOP domains
CATH domains 2quxE00 E:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux E 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain F from PDB Type:RNA Length:25
2qux F 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Chain G from PDB Type:PROTEIN Length:123
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:129
1
| 8 18 28 38 48 58 68 78 88 98 108 118
COAT_BPPP7 - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxg_ G: automated matches SCOP domains
CATH domains 2quxG00 G:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux G -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain G from PDB Type:PROTEIN Length:123
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:129
1
| 9 19 29 39 49 59 69 79 89 99 109 119
Q38062_BPPP7 - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxg_ G: automated matches SCOP domains
CATH domains 2quxG00 G:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux G -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain H from PDB Type:PROTEIN Length:119
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:127
10 20 30 40 50 60 70 80 90 100 110 120
COAT_BPPP7 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxh_ H: automated matches SCOP domains
CATH domains 2quxH00 H:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux H 1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | - | 80 90 100 110 120
21 24 68 75
Chain H from PDB Type:PROTEIN Length:119
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
Q38062_BPPP7 2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxh_ H: automated matches SCOP domains
CATH domains 2quxH00 H:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux H 1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | - | 80 90 100 110 120
21 24 68 75
Chain I from PDB Type:RNA Length:25
2qux I 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Chain J from PDB Type:PROTEIN Length:123
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:129
1
| 8 18 28 38 48 58 68 78 88 98 108 118
COAT_BPPP7 - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxj_ J: automated matches SCOP domains
CATH domains 2quxJ00 J:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux J -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain J from PDB Type:PROTEIN Length:123
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:129
1
| 9 19 29 39 49 59 69 79 89 99 109 119
Q38062_BPPP7 - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxj_ J: automated matches SCOP domains
CATH domains 2quxJ00 J:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee...------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux J -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 68 | 78 88 98 108 118
68 75
Chain K from PDB Type:PROTEIN Length:122
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:129
1
| 8 18 28 38 48 58 68 78 88 98 108 118
COAT_BPPP7 - --SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxk_ K: automated matches SCOP domains
CATH domains 2quxK00 K:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee-..------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux K -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV-SG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 | 68 | 78 88 98 108 118
65 || 75
67|
68
Chain K from PDB Type:PROTEIN Length:122
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:129
1
| 9 19 29 39 49 59 69 79 89 99 109 119
Q38062_BPPP7 - -MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxk_ K: automated matches SCOP domains
CATH domains 2quxK00 K:-1-127 MS2 Viral Coat Protein CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeee-..------..eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux K -1 SMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV-SG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
8 18 28 38 48 58 | 68 | 78 88 98 108 118
65 || 75
67|
68
Chain L from PDB Type:RNA Length:25
2qux L 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Chain M from PDB Type:PROTEIN Length:119
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:125
12 22 32 42 52 62 72 82 92 102 112 122
COAT_BPPP7 3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxm_ M: automated matches SCOP domains
CATH domains 2quxM00 M:3-127 MS2 Viral Coat Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
2qux M 3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
12 22 32 42 52 62 | - | 82 92 102 112 122
68 75
Chain M from PDB Type:PROTEIN Length:119
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:125
13 23 33 43 53 63 73 83 93 103 113 123
Q38062_BPPP7 4 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxm_ M: automated matches SCOP domains
CATH domains 2quxM00 M:3-127 MS2 Viral Coat Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
2qux M 3 TIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
12 22 32 42 52 62 | - | 82 92 102 112 122
68 75
Chain N from PDB Type:PROTEIN Length:119
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:127
10 20 30 40 50 60 70 80 90 100 110 120
COAT_BPPP7 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxn_ N: automated matches SCOP domains
CATH domains 2quxN00 N:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux N 1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | - | 80 90 100 110 120
21 24 68 75
Chain N from PDB Type:PROTEIN Length:119
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
Q38062_BPPP7 2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxn_ N: automated matches SCOP domains
CATH domains 2quxN00 N:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeee..eeeeeeeee..--.eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux N 1 SKTIVLSVGEATRTLTEIQST--RQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | - | 80 90 100 110 120
21 24 68 75
Chain O from PDB Type:RNA Length:25
2qux O 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Chain P from PDB Type:PROTEIN Length:122
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:128
1
| 9 19 29 39 49 59 69 79 89 99 109 119
COAT_BPPP7 - -SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxp_ P: automated matches SCOP domains
CATH domains 2quxP00 P:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux P 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain P from PDB Type:PROTEIN Length:122
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:128
10 20 30 40 50 60 70 80 90 100 110 120
Q38062_BPPP7 1 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxp_ P: automated matches SCOP domains
CATH domains 2quxP00 P:0-127 MS2 Viral Coat Protein CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeeeee..------.eeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux P 0 MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
9 19 29 39 49 59 |- | 79 89 99 109 119
68 75
Chain Q from PDB Type:PROTEIN Length:117
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:127
10 20 30 40 50 60 70 80 90 100 110 120
COAT_BPPP7 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quxq_ Q: automated matches SCOP domains
CATH domains 2quxQ00 Q:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains (1) Phage_coat-2quxQ01 Q: 1-127 Pfam domains (1)
Pfam domains (2) Phage_coat-2quxQ02 Q: 1-127 Pfam domains (2)
Pfam domains (3) Phage_coat-2quxQ03 Q: 1-127 Pfam domains (3)
Pfam domains (4) Phage_coat-2quxQ04 Q: 1-127 Pfam domains (4)
Pfam domains (5) Phage_coat-2quxQ05 Q: 1-127 Pfam domains (5)
Pfam domains (6) Phage_coat-2quxQ06 Q: 1-127 Pfam domains (6)
Pfam domains (7) Phage_coat-2quxQ07 Q: 1-127 Pfam domains (7)
Pfam domains (8) Phage_coat-2quxQ08 Q: 1-127 Pfam domains (8)
Pfam domains (9) Phage_coat-2quxQ09 Q: 1-127 Pfam domains (9)
Pfam domains (10) Phage_coat-2quxQ10 Q: 1-127 Pfam domains (10)
Pfam domains (11) Phage_coat-2quxQ11 Q: 1-127 Pfam domains (11)
Pfam domains (12) Phage_coat-2quxQ12 Q: 1-127 Pfam domains (12)
Sec.struct. author ..eeeeee..eeeeeeeee..-.eeeee..........eeeeeeee.....eeeeeeeeeee..---.------......eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux Q 1 SKTIVLSVGEATRTLTEIQST-DRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADV---G------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | | - | 80 90 100 110 120
21 | 64 68 75
23
Chain Q from PDB Type:PROTEIN Length:117
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
Q38062_BPPP7 2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quxq_ Q: automated matches SCOP domains
CATH domains 2quxQ00 Q:1-127 MS2 V iral Coat Protein CATH domains
Pfam domains (1) Phage_coat-2quxQ01 Q: 1-127 Pfam domains (1)
Pfam domains (2) Phage_coat-2quxQ02 Q: 1-127 Pfam domains (2)
Pfam domains (3) Phage_coat-2quxQ03 Q: 1-127 Pfam domains (3)
Pfam domains (4) Phage_coat-2quxQ04 Q: 1-127 Pfam domains (4)
Pfam domains (5) Phage_coat-2quxQ05 Q: 1-127 Pfam domains (5)
Pfam domains (6) Phage_coat-2quxQ06 Q: 1-127 Pfam domains (6)
Pfam domains (7) Phage_coat-2quxQ07 Q: 1-127 Pfam domains (7)
Pfam domains (8) Phage_coat-2quxQ08 Q: 1-127 Pfam domains (8)
Pfam domains (9) Phage_coat-2quxQ09 Q: 1-127 Pfam domains (9)
Pfam domains (10) Phage_coat-2quxQ10 Q: 1-127 Pfam domains (10)
Pfam domains (11) Phage_coat-2quxQ11 Q: 1-127 Pfam domains (11)
Pfam domains (12) Phage_coat-2quxQ12 Q: 1-127 Pfam domains (12)
Sec.struct. author ..eeeeee..eeeeeeeee..-.eeeee..........eeeeeeee.....eeeeeeeeeee..---.------......eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qux Q 1 SKTIVLSVGEATRTLTEIQST-DRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADV---G------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20| | 30 40 50 60 | | - | 80 90 100 110 120
21 | 64 68 75
23
Chain R from PDB Type:RNA Length:25
2qux R 1 GGCACAGAAGAUAUGGCUUCGUGCC 25
10 20
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |