Chain A from PDB Type:PROTEIN Length:125
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:131
1
| 6 16 26 36 46 56 66 76 86 96 106 116 126
COAT_BPPP7 - ----SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2quda_ A: automated matches SCOP domains
CATH domains 2qudA00 A:-3-127 MS2 Viral Coat Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeee....------...eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
2qud A -3 GGSMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
6 16 26 36 46 56 66 | 76 86 96 106 116 126
68 75
Chain A from PDB Type:PROTEIN Length:125
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:131
1
| 7 17 27 37 47 57 67 77 87 97 107 117 127
Q38062_BPPP7 - ---MSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2quda_ A: automated matches SCOP domains
CATH domains 2qudA00 A:-3-127 MS2 Viral Coat Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eeeeee..eeeeeeeeee....eeee..........eeeeeeee.....eeeeeeeeeeeee....------...eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
2qud A -3 GGSMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSG------LPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
6 16 26 36 46 56 66 | 76 86 96 106 116 126
68 75
Chain B from PDB Type:PROTEIN Length:117
aligned with COAT_BPPP7 | P03630 from UniProtKB/Swiss-Prot Length:127
Alignment length:127
10 20 30 40 50 60 70 80 90 100 110 120
COAT_BPPP7 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR 127
SCOP domains d2qudb_ B: automated matches SCOP domains
CATH domains 2qudB00 B:1-127 MS2 Viral Coat Protein CATH domains
Pfam domains (1) Phage_coat-2qudB01 B:1-127 Pfam domains (1)
Pfam domains (2) Phage_coat-2qudB02 B:1-127 Pfam domains (2)
Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeee.----------..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qud B 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV----------PKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20 30 40 50 60 | - | 80 90 100 110 120
65 76
Chain B from PDB Type:PROTEIN Length:117
aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL Length:128
Alignment length:127
11 21 31 41 51 61 71 81 91 101 111 121
Q38062_BPPP7 2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
SCOP domains d2qudb_ B: automated matches SCOP domains
CATH domains 2qudB00 B:1-127 MS2 Viral Coat Protein CATH domains
Pfam domains (1) Phage_coat-2qudB01 B:1-127 Pfam domains (1)
Pfam domains (2) Phage_coat-2qudB02 B:1-127 Pfam domains (2)
Sec.struct. author ..eeeeee..eeeeeeeeee...eeeee..........eeeeeeee.....eeeeeeeeeeeee.----------..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
2qud B 1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVV----------PKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
10 20 30 40 50 60 | - | 80 90 100 110 120
65 76
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |