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Sequence, Chains, Asymmetric and Biological Units

Title PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN
Keywords BACTERIOPHAGE COAT PROTEIN, RNA-PROTEIN COMPLEX, CAPSID PROT STRUCTURAL PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2QUX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 25 533 0
2  RNA    F 25 533 0
3  RNA    I 25 533 0
4  RNA    L 25 533 0
5  RNA    O 25 533 0
6  RNA    R 25 533 0
7  Protein   COAT PROTEIN  A 123 948 0
8  Protein   COAT PROTEIN  B 121 934 0
9  Protein   COAT PROTEIN  D 122 942 0
10  Protein   COAT PROTEIN  E 122 942 0
11  Protein   COAT PROTEIN  G 123 948 0
12  Protein   COAT PROTEIN  H 119 921 0
13  Protein   COAT PROTEIN  J 123 948 0
14  Protein   COAT PROTEIN  K 122 940 0
15  Protein   COAT PROTEIN  M 119 919 0
16  Protein   COAT PROTEIN  N 119 921 0
17  Protein   COAT PROTEIN  P 122 942 0
18  Protein   COAT PROTEIN  Q 117 908 0
19  Ligand   RNA (25-MER)  I 1 0 6
20  Ligand   RNA (25-MER)  L 1 0 6
21  Ligand   RNA (25-MER)  R 1 0 6
22  Ligand   COAT PROTEIN  A 2 0 12
23  Ligand   COAT PROTEIN  B 2 0 12
24  Ligand   COAT PROTEIN  D 2 0 12
25  Ligand   COAT PROTEIN  E 1 0 6
26  Ligand   COAT PROTEIN  G 1 0 6
27  Ligand   COAT PROTEIN  H 1 0 6
28  Ligand   COAT PROTEIN  J 2 0 12
29  Ligand   COAT PROTEIN  K 1 0 6
30 Water     512 0 512
total       2129 14411 602

Proteins
Unit 7 SER-1 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 8 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 9 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 10 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 11 SER-1 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 12 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 13 SER-1 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 14 SER-1 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 15 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 16 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 17 MET0 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ALA22 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 VAL65 ASP66 SER67 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127
Unit 18 SER1 LYS2 THR3 ILE4 VAL5 LEU6 SER7 VAL8 GLY9 GLU10 ALA11 THR12 ARG13 THR14 LEU15 THR16 GLU17 ILE18 GLN19 SER20 THR21 ASP23 ARG24 GLN25 ILE26 PHE27 GLU28 GLU29 LYS30 VAL31 GLY32 PRO33 LEU34 VAL35 GLY36 ARG37 LEU38 ARG39 LEU40 THR41 ALA42 SER43 LEU44 ARG45 GLN46 ASN47 GLY48 ALA49 LYS50 THR51 ALA52 TYR53 ARG54 VAL55 ASN56 LEU57 LYS58 LEU59 ASP60 GLN61 ALA62 ASP63 VAL64 GLY68 LEU75 PRO76 LYS77 VAL78 ARG79 TYR80 THR81 GLN82 VAL83 TRP84 SER85 HIS86 ASP87 VAL88 THR89 ILE90 VAL91 ALA92 ASN93 SER94 THR95 GLU96 ALA97 SER98 ARG99 LYS100 SER101 LEU102 TYR103 ASP104 LEU105 THR106 LYS107 SER108 LEU109 VAL110 ALA111 THR112 SER113 GLN114 VAL115 GLU116 ASP117 LEU118 VAL119 VAL120 ASN121 LEU122 VAL123 PRO124 LEU125 GLY126 ARG127

Nucleic acids
Unit 1 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25
Unit 2 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25
Unit 3 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25
Unit 4 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25
Unit 5 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25
Unit 6 G1 G2 C3 A4 C5 A6 G7 A8 A9 G10 A11 U12 A13 U14 G15 G16 C17 U18 U19 C20 G21 U22 G23 C24 C25

Ligands
Unit 19 GOL26
Unit 20 GOL26
Unit 21 GOL26
Unit 22 GOL128 GOL129
Unit 23 GOL128 GOL129
Unit 24 GOL128 GOL129
Unit 25 GOL128
Unit 26 GOL128
Unit 27 GOL128
Unit 28 GOL128 GOL129
Unit 29 GOL128

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany