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(-) Description

Title :  STRUCTURE OF BACTERIOPHAGE PP7 FROM PSEUDOMONAS AERUGINOSA AT 3.7 A RESOLUTION
 
Authors :  K. Tars, K. Fridborg, M. Bundule, L. Liljas
Date :  09 Dec 99  (Deposition) - 07 Feb 00  (Release) - 11 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Virus, Phage, Bacteriophage, Coat Protein, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tars, K. Fridborg, M. Bundule, L. Liljas
Structure Determination Of Phage Pp7 From Pseudomonas Aeruginosa: From Poor Data To A Good Map
Acta Crystallogr. , Sect. D V. 56 398 2000
PubMed-ID: 10739912  |  Reference-DOI: 10.1107/S0907444900001232

(-) Compounds

Molecule 1 - PHAGE COAT PROTEIN
    Chains: A, B, C
    Organism Scientific: BACTERIOPHAGE PP7
    Organism Taxid: 12023
    Other Details: THE BACTERIOPHAGE WAS GROWN IN THE HOST PSEUDOMONAS AERUGINOSA

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DWN)

(-) Sites  (0, 0)

(no "Site" information available for 1DWN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DWN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DWN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DWN)

(-) Exons   (0, 0)

(no "Exon" information available for 1DWN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d1dwna_ A: PP7 coat protein                                                                                                     SCOP domains
               CATH domains 1dwnA00 A:1-127 MS2 Viral Coat Protein                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeeeeee.eeeee..........eeeeeeeee....eeeeeeeeeeeeee...........eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dwn A   1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain B from PDB  Type:PROTEIN  Length:127
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d1dwnb_ B: PP7 coat protein                                                                                                     SCOP domains
               CATH domains 1dwnB00 B:1-127 MS2 Viral Coat Protein                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeeeeee.eeeee..........eeeeeeeee....eeeeeeeeeeeeee...........eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dwn B   1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain C from PDB  Type:PROTEIN  Length:127
 aligned with Q38062_BPPP7 | Q38062 from UniProtKB/TrEMBL  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
         Q38062_BPPP7     2 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 128
               SCOP domains d1dwnc_ C: PP7 coat protein                                                                                                     SCOP domains
               CATH domains 1dwnC00 C:1-127 MS2 Viral Coat Protein                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeeeeeeeee.eeeee..........eeeeeeeee....eeeeeeeeeeeeee...........eeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dwn C   1 SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSTSVCGELPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR 127
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DWN)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q38062_BPPP7 | Q38062)
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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 Related Entries

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UniProtKB/Swiss-Prot
        Q38062_BPPP7 | Q38062: 2qud 2qux

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