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(-) Description

Title :  HUMAN LIVER GLYCOGEN PHOSPHORYLASE- GL COMPLEX
 
Authors :  A. Pautsch, R. Streicher, O. Wissdorf, N. Stadler
Date :  13 Jul 07  (Deposition) - 19 Feb 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Drug Discovery, Glycogen Metabolism, Protein-Protein Interaction, Allosteric Enzyme, Carbohydrate Metabolism, Disease Mutation, Glycogen Storage Disease, Glycosyltransferase, Nucleotide-Binding, Phosphorylation, Pyridoxal Phosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Pautsch, N. Stadler, O. Wissdorf, E. Langkopf, W. Moreth, R. Streicher
Molecular Recognition Of The Protein Phosphatase 1 Glycogen Targeting Subunit By Glycogen Phosphorylase.
J. Biol. Chem. V. 283 8913 2008
PubMed-ID: 18198182  |  Reference-DOI: 10.1074/JBC.M706612200

(-) Compounds

Molecule 1 - GLYCOGEN PHOSPHORYLASE, LIVER FORM
    ChainsA
    EC Number2.4.1.1
    EngineeredYES
    Expression SystemUNIDENTIFIED BACULOVIRUS
    Expression System CellHIGH FIVE CELLS
    Expression System StrainSF9
    Expression System Taxid10469
    GenePYGL
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - PROTEIN TARGETING TO GLYCOGEN - GL
    ChainsB
    EngineeredYES
    FragmentGL-CTERM (281-284)
    Other DetailsPEPTIDE SYNTHESIS
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1PLP1Ligand/IonPYRIDOXAL-5'-PHOSPHATE
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
2SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:90 , GLY A:135 , LYS A:568 , LYS A:574 , ARG A:649 , VAL A:650 , THR A:676 , GLY A:677 , LYS A:680BINDING SITE FOR RESIDUE PLP A 999

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QLL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QLL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (8, 8)

Asymmetric Unit (8, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007907V222IPYGL_HUMANPolymorphism946616AV221I
2UniProtVAR_013095V231EPYGL_HUMANPolymorphism1042195AV230E
3UniProtVAR_007908N339SPYGL_HUMANDisease (GSD6)113993976AN338S
4UniProtVAR_007909N377KPYGL_HUMANDisease (GSD6)113993977AN376K
5UniProtVAR_034425R425PPYGL_HUMANPolymorphism2228499AR424P
6UniProtVAR_034426V698GPYGL_HUMANPolymorphism35831273AV697G
7UniProtVAR_013096R715SPYGL_HUMANPolymorphism1042210AR714S
8UniProtVAR_034427I806LPYGL_HUMANPolymorphism34313873AI805L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (8, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_007907V222IPYGL_HUMANPolymorphism946616AV221I
2UniProtVAR_013095V231EPYGL_HUMANPolymorphism1042195AV230E
3UniProtVAR_007908N339SPYGL_HUMANDisease (GSD6)113993976AN338S
4UniProtVAR_007909N377KPYGL_HUMANDisease (GSD6)113993977AN376K
5UniProtVAR_034425R425PPYGL_HUMANPolymorphism2228499AR424P
6UniProtVAR_034426V698GPYGL_HUMANPolymorphism35831273AV697G
7UniProtVAR_013096R715SPYGL_HUMANPolymorphism1042210AR714S
8UniProtVAR_034427I806LPYGL_HUMANPolymorphism34313873AI805L

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHORYLASEPS00102 Phosphorylase pyridoxal-phosphate attachment site.PYGL_HUMAN673-685  1A:672-684
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHORYLASEPS00102 Phosphorylase pyridoxal-phosphate attachment site.PYGL_HUMAN673-685  2A:672-684

(-) Exons   (20, 20)

Asymmetric Unit (20, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002163921aENSE00001368552chr14:51411234-51410879356PYGL_HUMAN1-81811A:4-8077
1.2ENST000002163922ENSE00000657195chr14:51404555-51404454102PYGL_HUMAN82-115341A:81-11434
1.3bENST000002163923bENSE00000657194chr14:51401903-5140182579PYGL_HUMAN116-142271A:115-14127
1.4aENST000002163924aENSE00000657193chr14:51398494-51398391104PYGL_HUMAN142-176351A:141-175 (gaps)35
1.5aENST000002163925aENSE00000657192chr14:51390818-51390687132PYGL_HUMAN177-220441A:176-21944
1.6ENST000002163926ENSE00000657191chr14:51387785-51387674112PYGL_HUMAN221-258381A:220-25031
1.7ENST000002163927ENSE00001647495chr14:51387341-5138725983PYGL_HUMAN258-285281A:266-28116
1.8aENST000002163928aENSE00001507082chr14:51383823-51383680144PYGL_HUMAN286-333481A:286-332 (gaps)47
1.9ENST000002163929ENSE00001800310chr14:51383452-5138336093PYGL_HUMAN334-364311A:333-36331
1.10aENST0000021639210aENSE00000657186chr14:51382689-51382543147PYGL_HUMAN365-413491A:364-41249
1.11ENST0000021639211ENSE00000657184chr14:51382217-51382054164PYGL_HUMAN414-468551A:413-46755
1.12ENST0000021639212ENSE00000657182chr14:51381533-51381419115PYGL_HUMAN468-506391A:467-50539
1.13ENST0000021639213ENSE00000657181chr14:51379848-51379747102PYGL_HUMAN507-540341A:506-53934
1.14aENST0000021639214aENSE00000657180chr14:51379021-51378874148PYGL_HUMAN541-590501A:540-58950
1.15aENST0000021639215aENSE00000657178chr14:51378754-5137869659PYGL_HUMAN590-609201A:589-60820
1.16bENST0000021639216bENSE00000657176chr14:51378589-51378448142PYGL_HUMAN610-657481A:609-65648
1.17bENST0000021639217bENSE00001681548chr14:51376820-51376613208PYGL_HUMAN657-726701A:656-72570
1.18ENST0000021639218ENSE00000657174chr14:51375673-51375539135PYGL_HUMAN726-771461A:725-77046
1.19aENST0000021639219aENSE00000657173chr14:51375055-5137498967PYGL_HUMAN771-793231A:770-79223
1.20aENST0000021639220aENSE00002201324chr14:51372274-51371939336PYGL_HUMAN794-847541A:793-83846

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:806
 aligned with PYGL_HUMAN | P06737 from UniProtKB/Swiss-Prot  Length:847

    Alignment length:835
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834     
           PYGL_HUMAN     5 LTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN 839
               SCOP domains d2qlla_ A: Glycogen phosphorylase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------2qllA01 A:10-485,A:813-836 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                                                        2qllA02 A:486-812 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                            2qllA01                 -- CATH domains
               Pfam domains -----------------------------------------------------------------------------------------------------------Phosphorylase-2qllA01 A:111-829                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                --------- Pfam domains
         Sec.struct. author .....hhhhh.........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhh.hhhhhhhhhhhh..hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeee..----...eee..eee..............ee.hhhheeeee..eee......eee..eeeeeeeeeeeee......eeeeeeeeee...---------------......hhhhhh....----hhhhhhhhhhhhhhhhhhhhhhhhhhhh...------.hhhhhhhh.eeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhheeee..........eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee.....eeehhhhhhhh..eeee.hhhhhhhhhhh.hhhhhhhh...eee..............hhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee........hhhhhhhhhhhhhh...........eeeeee......hhhhhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhh.eeee.........hhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhee...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I--------E-----------------------------------------------------------------------------------------------------------S-------------------------------------K-----------------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------S------------------------------------------------------------------------------------------L--------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:4-80 UniProt: 1-81 [INCOMPLETE]                            Exon 1.2  PDB: A:81-114           Exon 1.3b  PDB: A:115-141  ----------------------------------Exon 1.5a  PDB: A:176-219 UniProt: 177-220  Exon 1.6  PDB: A:220-250 [INCOMPLETE] ---------------------------Exon 1.8a  PDB: A:286-332 (gaps) [INCOMPLETE]   Exon 1.9  PDB: A:333-363       Exon 1.10a  PDB: A:364-412 UniProt: 365-413      Exon 1.11  PDB: A:413-467 UniProt: 414-468             --------------------------------------Exon 1.13  PDB: A:506-539         Exon 1.14a  PDB: A:540-589 UniProt: 541-590       -------------------Exon 1.16b  PDB: A:609-656 UniProt: 610-657     --------------------------------------------------------------------Exon 1.18  PDB: A:725-770 UniProt: 726-771    ----------------------Exon 1.20a  PDB: A:793-838 UniProt: 794-847    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------Exon 1.4a  PDB: A:141-175 (gaps)   ---------------------------------------------------------------------------------Exon 1.7  PDB: A:266-281    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: A:467-505              -----------------------------------------------------------------------------------Exon 1.15a          -----------------------------------------------Exon 1.17b  PDB: A:656-725 UniProt: 657-726                           --------------------------------------------Exon 1.19a             ---------------------------------------------- Transcript 1 (2)
                 2qll A   4 LTDQEKRRQIsIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRY----FNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN---------------VLDRNLAENISRVLYP----FEGKELRLKQEYFVVAATLQDIIRRFKASKF------GTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN 838
                                    13|       23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -  |    173       183       193       203       213       223       233       243      |  -         -  |    273       | -  |    293       303       313  |    323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833     
                                     14-SEP                                                                                                                                            161  166                                                                                 250             266            281  286                           316    323                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2qll B 281 GPYY 284

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: GT-B (132)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)
Chain A   (PYGL_HUMAN | P06737)
molecular function
    GO:0016208    AMP binding    Interacting selectively and non-covalently with AMP, adenosine monophosphate.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0032052    bile acid binding    Interacting selectively and non-covalently with bile acids, any of a group of steroid carboxylic acids occurring in bile.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0005536    glucose binding    Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
    GO:0008184    glycogen phosphorylase activity    Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004645    phosphorylase activity    Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0002060    purine nucleobase binding    Interacting selectively and non-covalently with a purine nucleobase, an organic nitrogenous base with a purine skeleton.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
    GO:0019842    vitamin binding    Interacting selectively and non-covalently with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
biological process
    GO:0006015    5-phosphoribose 1-diphosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0005980    glycogen catabolic process    The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0005977    glycogen metabolic process    The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0070266    necroptotic process    A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  PYGL_HUMAN | P06737
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  2.4.1.1
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  232700
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  PYGL_HUMAN | P06737
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYGL_HUMAN | P067371em6 1exv 1fa9 1fc0 1l5q 1l5r 1l5s 1l7x 1xoi 2ati 2zb2 3ceh 3cej 3cem 3dd1 3dds 3ddw

(-) Related Entries Specified in the PDB File

1fa9 1fc0