1XOI - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH CHLOROINDOLOYL GLYCINE AMIDE

Authors :   S. W. Wright, V. L. Rath, E. M. Gibbs, J. L. Treadway

Date :   06 Oct 04 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Allosteric Enzyme, Glycogen Storage Disease, Glycosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. W. Wright, V. L. Rath, P. E. Genereux, D. L. Hageman, C. B. Levy, L. D. Mcclure, S. C. Mccoid, R. K. Mcpherson, T. M. Schelhorn, D. E. Wilder, W. J. Zavadoski, E. M. Gibbs, J. L. Treadway
5-Chloroindoloyl Glycine Amide Inhibitors Of Glycogen Phosphorylase: Synthesis, In Vitro, In Vivo, And X-Ray Crystallographic Characterization.
Bioorg. Med. Chem. Lett. V. 15 459 2005
PubMed-ID: 15603973 | Reference-DOI: 10.1016/J.BMCL.2004.10.048

Molecule 1 - GLYCOGEN PHOSPHORYLASE, LIVER FORM
	Chains	:	A, B
	EC Number	:	2.4.1.1
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 6)

No.	Name	Count	Type	Full Name
1	288	2	Ligand/Ion	5-CHLORO-1H-INDOLE-2-CARBOXYLIC ACID{[CYCLOPENTYL-(2-HYDROXY-ETHYL)-CARBAMOYL]-METHYL}-AMIDE
2	NBG	2	Ligand/Ion	1-N-ACETYL-BETA-D-GLUCOSAMINE
3	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:284 , HIS A:377 , VAL A:455 , ASN A:484 , TYR A:573 , GLU A:672 , ALA A:673 , SER A:674 , GLY A:675 , HOH A:1981 , HOH A:2115 , HOH A:2223	BINDING SITE FOR RESIDUE NBG A 861
2	AC2	SOFTWARE	GLY B:1135 , LEU B:1136 , ASN B:1284 , ASP B:1339 , HIS B:1377 , THR B:1378 , VAL B:1455 , ASN B:1484 , TYR B:1573 , GLU B:1672 , ALA B:1673 , SER B:1674 , GLY B:1675 , HOH B:1864 , HOH B:2086 , HOH B:2253 , HOH B:2254	BINDING SITE FOR RESIDUE NBG B 1861
3	AC3	SOFTWARE	GLY A:134 , GLY A:135 , LYS A:568 , LYS A:574 , TYR A:648 , ARG A:649 , VAL A:650 , GLY A:675 , THR A:676 , GLY A:677 , LYS A:680 , HOH A:1886 , HOH A:1891 , HOH A:1981 , HOH A:2053 , HOH A:2063 , HOH A:2154	BINDING SITE FOR RESIDUE PLP A 860
4	AC4	SOFTWARE	GLY B:1134 , GLY B:1135 , TRP B:1491 , LYS B:1568 , LYS B:1574 , TYR B:1648 , ARG B:1649 , VAL B:1650 , GLY B:1675 , THR B:1676 , GLY B:1677 , LYS B:1680 , HOH B:1907 , HOH B:1920 , HOH B:1936 , HOH B:2015 , HOH B:2182	BINDING SITE FOR RESIDUE PLP B 1860
5	AC5	SOFTWARE	ARG A:60 , LEU A:63 , VAL A:64 , TRP A:67 , PRO A:188 , GLU A:190 , LYS A:191 , SER A:192 , PRO A:194 , HOH A:1991 , HOH A:1994 , THR B:1038 , VAL B:1040 , HIS B:1057 , TYR B:1185 , GLY B:1186 , ASN B:1187 , PRO B:1188 , HOH B:2228	BINDING SITE FOR RESIDUE 288 A 862
6	AC6	SOFTWARE	THR A:38 , VAL A:40 , HIS A:57 , TYR A:185 , PRO A:188 , ARG B:1060 , LEU B:1063 , VAL B:1064 , TRP B:1067 , PRO B:1188 , GLU B:1190 , LYS B:1191 , SER B:1192 , HOH B:1911 , HOH B:1948 , HOH B:2068	BINDING SITE FOR RESIDUE 288 B 1862

(no "SS Bond" information available for 1XOI)

(no "Cis Peptide Bond" information available for 1XOI)

Asymmetric/Biological Unit (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007907	V	222	I	PYGL_HUMAN	Polymorphism	946616	A B	V	221 1221	I
2	UniProt	VAR_013095	V	231	E	PYGL_HUMAN	Polymorphism	1042195	A B	V	230 1230	E
3	UniProt	VAR_007908	N	339	S	PYGL_HUMAN	Disease (GSD6)	113993976	A B	N	338 1338	S
4	UniProt	VAR_007909	N	377	K	PYGL_HUMAN	Disease (GSD6)	113993977	A B	N	376 1376	K
5	UniProt	VAR_034425	R	425	P	PYGL_HUMAN	Polymorphism	2228499	A B	R	424 1424	P
6	UniProt	VAR_034426	V	698	G	PYGL_HUMAN	Polymorphism	35831273	A B	V	697 1697	G
7	UniProt	VAR_013096	R	715	S	PYGL_HUMAN	Polymorphism	1042210	A B	R	714 1714	S
8	UniProt	VAR_034427	I	806	L	PYGL_HUMAN	Polymorphism	34313873	A B	I	805 1805	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHOSPHORYLASE	PS00102	Phosphorylase pyridoxal-phosphate attachment site.	PYGL_HUMAN	673-685	2	A:672-684 B:1672-1684

Asymmetric/Biological Unit (20, 40)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000216392	1a	ENSE00001368552	chr14:51411234-51410879	356	PYGL_HUMAN	1-81	81	2	A:23-80 B:1023-1080	58 58
1.2	ENST00000216392	2	ENSE00000657195	chr14:51404555-51404454	102	PYGL_HUMAN	82-115	34	2	A:81-114 B:1081-1114	34 34
1.3b	ENST00000216392	3b	ENSE00000657194	chr14:51401903-51401825	79	PYGL_HUMAN	116-142	27	2	A:115-141 B:1115-1141	27 27
1.4a	ENST00000216392	4a	ENSE00000657193	chr14:51398494-51398391	104	PYGL_HUMAN	142-176	35	2	A:141-175 B:1141-1175	35 35
1.5a	ENST00000216392	5a	ENSE00000657192	chr14:51390818-51390687	132	PYGL_HUMAN	177-220	44	2	A:176-219 B:1176-1219	44 44
1.6	ENST00000216392	6	ENSE00000657191	chr14:51387785-51387674	112	PYGL_HUMAN	221-258	38	2	A:220-249 B:1220-1249	30 30
1.7	ENST00000216392	7	ENSE00001647495	chr14:51387341-51387259	83	PYGL_HUMAN	258-285	28	2	A:262-284 B:1262-1284	23 23
1.8a	ENST00000216392	8a	ENSE00001507082	chr14:51383823-51383680	144	PYGL_HUMAN	286-333	48	2	A:285-332 B:1285-1332	48 48
1.9	ENST00000216392	9	ENSE00001800310	chr14:51383452-51383360	93	PYGL_HUMAN	334-364	31	2	A:333-363 B:1333-1363	31 31
1.10a	ENST00000216392	10a	ENSE00000657186	chr14:51382689-51382543	147	PYGL_HUMAN	365-413	49	2	A:364-412 B:1364-1412	49 49
1.11	ENST00000216392	11	ENSE00000657184	chr14:51382217-51382054	164	PYGL_HUMAN	414-468	55	2	A:413-467 B:1413-1467	55 55
1.12	ENST00000216392	12	ENSE00000657182	chr14:51381533-51381419	115	PYGL_HUMAN	468-506	39	2	A:467-505 B:1467-1505	39 39
1.13	ENST00000216392	13	ENSE00000657181	chr14:51379848-51379747	102	PYGL_HUMAN	507-540	34	2	A:506-539 B:1506-1539	34 34
1.14a	ENST00000216392	14a	ENSE00000657180	chr14:51379021-51378874	148	PYGL_HUMAN	541-590	50	2	A:540-589 B:1540-1589	50 50
1.15a	ENST00000216392	15a	ENSE00000657178	chr14:51378754-51378696	59	PYGL_HUMAN	590-609	20	2	A:589-608 B:1589-1608	20 20
1.16b	ENST00000216392	16b	ENSE00000657176	chr14:51378589-51378448	142	PYGL_HUMAN	610-657	48	2	A:609-656 B:1609-1656	48 48
1.17b	ENST00000216392	17b	ENSE00001681548	chr14:51376820-51376613	208	PYGL_HUMAN	657-726	70	2	A:656-725 B:1656-1725	70 70
1.18	ENST00000216392	18	ENSE00000657174	chr14:51375673-51375539	135	PYGL_HUMAN	726-771	46	2	A:725-770 B:1725-1770	46 46
1.19a	ENST00000216392	19a	ENSE00000657173	chr14:51375055-51374989	67	PYGL_HUMAN	771-793	23	2	A:770-792 B:1770-1792	23 23
1.20a	ENST00000216392	20a	ENSE00002201324	chr14:51372274-51371939	336	PYGL_HUMAN	794-847	54	2	A:793-838 B:1793-1838	46 46

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:804
 aligned with PYGL_HUMAN | P06737 from UniProtKB/Swiss-Prot  Length:847

    Alignment length:816
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833      
          PYGL_HUMAN     24 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN  839
               SCOP domains d1xoia_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xoiA01 A:23-485,A:813-836 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                                           1xoiA02 A:486-812 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                            1xoiA01                 -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeee.hhhhhhhhh.hhhhhhhhhhhh..hhhhhhh....eee..hhhhhhhhhhhhhhhhh...eeeeee.......eeeee..eeeee............ee.hhhheeeee..eeeee..eeeee..eeeeeeeeeeeee......eeeeeeeeee..------------hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh...............hhhhheeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhheeee....hhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee.....eeehhhhhhhhh..eee.hhhhhhhhhhh.hhhhhhhh...eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee.......hhhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeee...hhhhhhhhhhhh.eeee..........hhhhhhhhh..eeee....hhhhhhhhhhhhhhee...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:23-80 UniProt: 1-81 [INCOMPLETE]        Exon 1.2  PDB: A:81-114           Exon 1.3b  PDB: A:115-141  ----------------------------------Exon 1.5a  PDB: A:176-219 UniProt: 177-220  Exon 1.6  PDB: A:220-249 [INCOMPLETE] ---------------------------Exon 1.8a  PDB: A:285-332 UniProt: 286-333      Exon 1.9  PDB: A:333-363       Exon 1.10a  PDB: A:364-412 UniProt: 365-413      Exon 1.11  PDB: A:413-467 UniProt: 414-468             --------------------------------------Exon 1.13  PDB: A:506-539         Exon 1.14a  PDB: A:540-589 UniProt: 541-590       -------------------Exon 1.16b  PDB: A:609-656 UniProt: 610-657     --------------------------------------------------------------------Exon 1.18  PDB: A:725-770 UniProt: 726-771    ----------------------Exon 1.20a  PDB: A:793-838 UniProt: 794-847    Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------Exon 1.4a  PDB: A:141-175          ---------------------------------------------------------------------------------Exon 1.7  PDB: A:262-284    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: A:467-505              -----------------------------------------------------------------------------------Exon 1.15a          -----------------------------------------------Exon 1.17b  PDB: A:656-725 UniProt: 657-726                           --------------------------------------------Exon 1.19a             ---------------------------------------------- Transcript 1 (2)
                1xoi A   23 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAP------------YIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN  838
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      |  -       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832      
                                                                                                                                                                                                                                                            249          262

Chain B from PDB  Type:PROTEIN  Length:804
 aligned with PYGL_HUMAN | P06737 from UniProtKB/Swiss-Prot  Length:847

    Alignment length:816
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833      
          PYGL_HUMAN     24 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN  839
               SCOP domains d1xoib_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xoiB01 B:1023-1485,B:1813-1836 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                                      1xoiB02 B:1486-1812 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                          1xoiB01                 -- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------Phosphorylase-1xoiB01 B:1111-1829                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              --------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------Phosphorylase-1xoiB02 B:1111-1829                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              --------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeee.hhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhh..eee..hhhhhhhhhhhhhhhhh...eeeeee.......eeeee..eeeee............ee.hhhheeeee..eeeee..eeeee..eeeeeeeeeeeee......eeeeeeeeee..------------hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhheeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhheeee....hhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee.....eeehhhhhhhhh..eee.hhhhhhhhhhh.hhhhhhhh...eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeee...hhhhhhhhhhhh.eeee..........hhhhhhhhh..eeee....hhhhhhhhhhhhhhee...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I--------E-----------------------------------------------------------------------------------------------------------S-------------------------------------K-----------------------------------------------P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------S------------------------------------------------------------------------------------------L--------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: B:1023-1080 UniProt: 1-81 [INCOMPLETE]    Exon 1.2  PDB: B:1081-1114        Exon 1.3b  PDB: B:1115-1141----------------------------------Exon 1.5a  PDB: B:1176-1219 UniProt: 177-220Exon 1.6  PDB: B:1220-1249            ---------------------------Exon 1.8a  PDB: B:1285-1332 UniProt: 286-333    Exon 1.9  PDB: B:1333-1363     Exon 1.10a  PDB: B:1364-1412 UniProt: 365-413    Exon 1.11  PDB: B:1413-1467 UniProt: 414-468           --------------------------------------Exon 1.13  PDB: B:1506-1539       Exon 1.14a  PDB: B:1540-1589 UniProt: 541-590     -------------------Exon 1.16b  PDB: B:1609-1656 UniProt: 610-657   --------------------------------------------------------------------Exon 1.18  PDB: B:1725-1770 UniProt: 726-771  ----------------------Exon 1.20a  PDB: B:1793-1838 UniProt: 794-847  Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------Exon 1.4a  PDB: B:1141-1175        ---------------------------------------------------------------------------------Exon 1.7  PDB: B:1262-1284  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: B:1467-1505            -----------------------------------------------------------------------------------Exon 1.15a          -----------------------------------------------Exon 1.17b  PDB: B:1656-1725 UniProt: 657-726                         --------------------------------------------Exon 1.19a             ---------------------------------------------- Transcript 1 (2)
                1xoi B 1023 NVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAP------------YIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSN 1838
                                  1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      |  -      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552      1562      1572      1582      1592      1602      1612      1622      1632      1642      1652      1662      1672      1682      1692      1702      1712      1722      1732      1742      1752      1762      1772      1782      1792      1802      1812      1822      1832      
                                                                                                                                                                                                                                                           1249         1262

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: UDP-Glycosyltransferase/glycogen phosphorylase (296)

Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase (296)

Family: Oligosaccharide phosphorylase (199)

Protein domain: automated matches (106)

Human (Homo sapiens) [TaxId: 9606] (3)

1a	d1xoia_	A:
1b	d1xoib_	B:

Asymmetric/Biological Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Glycogen Phosphorylase B; (202)

Human (Homo sapiens) (16)

1a	1xoiA02	A:486-812
1b	1xoiA01	A:23-485,A:813-836
1c	1xoiB01	B:1023-1485,B:1813-1836
1d	1xoiB02	B:1486-1812

Asymmetric/Biological Unit

Clans(

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Families(

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Organisms( (-)

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Clan: GT-B (132)

Family: Phosphorylase (83)

Homo sapiens (Human) (8)

1a	Phosphorylase-1xoiB01	B:1111-1829
1b	Phosphorylase-1xoiB02	B:1111-1829

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PYGL_HUMAN | P06737)

molecular function
	GO:0016208	AMP binding	Interacting selectively and non-covalently with AMP, adenosine monophosphate.
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0032052	bile acid binding	Interacting selectively and non-covalently with bile acids, any of a group of steroid carboxylic acids occurring in bile.
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008144	drug binding	Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
	GO:0005536	glucose binding	Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
	GO:0008184	glycogen phosphorylase activity	Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004645	phosphorylase activity	Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0002060	purine nucleobase binding	Interacting selectively and non-covalently with a purine nucleobase, an organic nitrogenous base with a purine skeleton.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0019842	vitamin binding	Interacting selectively and non-covalently with a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
biological process
	GO:0006015	5-phosphoribose 1-diphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0042593	glucose homeostasis	Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
	GO:0005980	glycogen catabolic process	The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
	GO:0005977	glycogen metabolic process	The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0070266	necroptotic process	A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	Cis Peptide Bonds
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	1xoi
		Family and Domain Information	:	ProDom \| SYSTERS
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	PYGL_HUMAN \| P06737
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	2.4.1.1
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

PROSITE Motifs (1, 2)

Exons (20, 40)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (1, 4)

Pfam Domains (1, 2)

Gene Ontology (28, 28)

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