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Title :   CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF PHOP

Authors :   S. Wang

Date :   23 Apr 07 (Deposition) - 26 Feb 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Winged Helix-Tun-Helx, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Wang, J. Engohang-Ndong, I. Smith
Structure Of The Dna-Binding Domain Of The Response Regulator Phop From Mycobacterium Tuberculosis
Biochemistry V. 46 14751 2007
PubMed-ID: 18052041 | Reference-DOI: 10.1021/BI700970A

Molecule 1 - RESPONSE REGULATOR PHOP
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	DNA-BINDING DOMAIN, RESIDUES 144-247
	Gene	:	PHOP
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 18)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	GLY	3	Mod. Amino Acid	GLYCINE
3	K	3	Ligand/Ion	POTASSIUM ION
4	PO4	4	Ligand/Ion	PHOSPHATE ION
5	UNX	4	Ligand/Ion	UNKNOWN ATOM OR ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:184 , LYS A:197 , HIS A:201 , HOH A:6032 , TYR D:184 , LYS D:197 , HIS D:201 , HOH D:6029	BINDING SITE FOR RESIDUE PO4 D 1001
02	AC2	SOFTWARE	ARG D:231 , HIS D:234 , THR D:235 , ARG D:237 , HOH D:6069 , HOH D:6076 , HOH D:6107	BINDING SITE FOR RESIDUE PO4 D 1002
03	AC3	SOFTWARE	ARG B:183 , HOH B:5044 , ARG E:183	BINDING SITE FOR RESIDUE PO4 E 1003
04	AC4	SOFTWARE	ARG A:231 , HIS A:234 , THR A:235 , HOH A:6068 , HOH A:6083	BINDING SITE FOR RESIDUE PO4 A 1004
05	AC5	SOFTWARE	HIS A:201 , HOH A:6053 , ASP D:200 , HIS D:201 , TRP D:203	BINDING SITE FOR RESIDUE K D 2001
06	AC6	SOFTWARE	ASP A:200 , HIS A:201 , TRP A:203 , HOH A:6053 , HIS D:201	BINDING SITE FOR RESIDUE K A 2002
07	AC7	SOFTWARE	ASN B:148 , ARG B:150 , ASN E:148 , ARG E:150	BINDING SITE FOR RESIDUE K E 2003
08	AC8	SOFTWARE	ARG A:204 , PHE A:207 , HOH A:6093 , ASN E:148	BINDING SITE FOR RESIDUE CL E 3001
09	AC9	SOFTWARE	ASN B:148 , ARG D:204 , HOH E:5048	BINDING SITE FOR RESIDUE CL D 3004
10	BC1	SOFTWARE	SER B:216 , ASP C:155 , GLU C:245	BINDING SITE FOR RESIDUE GLY B 4001
11	BC2	SOFTWARE	ARG C:150 , HOH C:306 , ASP E:200 , HIS E:201 , TRP E:203 , ARG E:204	BINDING SITE FOR RESIDUE GLY B 4002
12	BC3	SOFTWARE	ASP B:200 , HIS B:201 , TRP B:203 , ARG B:204	BINDING SITE FOR RESIDUE GLY B 4003
13	BC4	SOFTWARE	GLY B:4002 , HIS E:201	BINDING SITE FOR RESIDUE UNX E 5001
14	BC5	SOFTWARE	HIS B:201	BINDING SITE FOR RESIDUE UNX B 5002
15	BC6	SOFTWARE	GLU D:229 , SER F:219 , ARG F:222 , HOH F:271	BINDING SITE FOR RESIDUE UNX D 6001
16	BC7	SOFTWARE	GLU A:229 , SER C:219 , ARG C:222 , HOH C:269	BINDING SITE FOR RESIDUE UNX A 6002

(no "SS Bond" information available for 2PMU)

(no "Cis Peptide Bond" information available for 2PMU)

(no "SAP(SNP)/Variant" information available for 2PMU)

(no "PROSITE Motif" information available for 2PMU)

(no "Exon" information available for 2PMU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:98
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:98
                                   158       168       178       188       198       208       218       228       238        
         P71814_MYCTU   149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmua_ A: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2pmu A 149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   158       168       178       188       198       208       218       228       238

Chain A from PDB  Type:PROTEIN  Length:98
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:98
                                   151       161       171       181       191       201       211       221       231        
         Q7D9B8_MYCTO   142 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmua_ A: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2pmu A 149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   158       168       178       188       198       208       218       228       238

Chain B from PDB  Type:PROTEIN  Length:103
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:103
                                   153       163       173       183       193       203       213       223       233       243   
         P71814_MYCTU   144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmub_ B: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2pmu B 144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   153       163       173       183       193       203       213       223       233       243

Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:103
                                   146       156       166       176       186       196       206       216       226       236   
         Q7D9B8_MYCTO   137 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmub_ B: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2pmu B 144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   153       163       173       183       193       203       213       223       233       243

Chain C from PDB  Type:PROTEIN  Length:92
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:99
                                   157       167       177       187       197       207       217       227       237         
         P71814_MYCTU   148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmuc_ C: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh-------hhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2pmu C 148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVW-------VNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   157       167       177       187       197     |   -   |   217       227       237         
                                                                                 203     211

Chain C from PDB  Type:PROTEIN  Length:92
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:99
                                   150       160       170       180       190       200       210       220       230         
         Q7D9B8_MYCTO   141 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmuc_ C: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh-------hhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2pmu C 148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVW-------VNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   157       167       177       187       197     |   -   |   217       227       237         
                                                                                 203     211

Chain D from PDB  Type:PROTEIN  Length:96
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:98
                                   158       168       178       188       198       208       218       228       238        
         P71814_MYCTU   149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmud_ D: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh.....--hhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2pmu D 149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFG--VNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   158       168       178       188       198       208  |    218       228       238        
                                                                                     208  |                                   
                                                                                        211

Chain D from PDB  Type:PROTEIN  Length:96
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:98
                                   151       161       171       181       191       201       211       221       231        
         Q7D9B8_MYCTO   142 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmud_ D: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh.....--hhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2pmu D 149 VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFG--VNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   158       168       178       188       198       208  |    218       228       238        
                                                                                     208  |                                   
                                                                                        211

Chain E from PDB  Type:PROTEIN  Length:103
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:103
                                   153       163       173       183       193       203       213       223       233       243   
         P71814_MYCTU   144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmue_ E: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2pmu E 144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   153       163       173       183       193       203       213       223       233       243

Chain E from PDB  Type:PROTEIN  Length:103
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:103
                                   146       156       166       176       186       196       206       216       226       236   
         Q7D9B8_MYCTO   137 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmue_ E: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..eeee.....eee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2pmu E 144 KEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   153       163       173       183       193       203       213       223       233       243

Chain F from PDB  Type:PROTEIN  Length:93
 aligned with P71814_MYCTU | P71814 from UniProtKB/TrEMBL  Length:247

    Alignment length:99
                                   157       167       177       187       197       207       217       227       237         
         P71814_MYCTU   148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
               SCOP domains d2pmuf_ F: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh------hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2pmu F 148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVW------DVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   157       167       177       187       197     |   -  |    217       227       237         
                                                                                 203    210

Chain F from PDB  Type:PROTEIN  Length:93
 aligned with Q7D9B8_MYCTO | Q7D9B8 from UniProtKB/TrEMBL  Length:240

    Alignment length:99
                                   150       160       170       180       190       200       210       220       230         
         Q7D9B8_MYCTO   141 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 239
               SCOP domains d2pmuf_ F: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeee..eee..hhhhhhhhhhhhhh.....hhhhhhhhhh------hhhhhhhhhhhhhhhhh......eeee...eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2pmu F 148 NVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVW------DVNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP 246
                                   157       167       177       187       197     |   -  |    217       227       237         
                                                                                 203    210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: C-terminal effector domain of the bipartite response regulators (45)

Family: automated matches (19)

Protein domain: automated matches (19)

Mycobacterium tuberculosis [TaxId: 83332] (2)

1a	d2pmua_	A:
1b	d2pmub_	B:
1c	d2pmuc_	C:
1d	d2pmud_	D:
1e	d2pmue_	E:
1f	d2pmuf_	F:

(no "CATH Domain" information available for 2PMU)

(no "Pfam Domain" information available for 2PMU)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (P71814_MYCTU | P71814)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
	GO:0009247	glycolipid biosynthetic process	The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide).
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0000160	phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
	GO:0010628	positive regulation of gene expression	Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0046889	positive regulation of lipid biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0044315	protein secretion by the type VII secretion system	The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type VII protein secretion system.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D,E,F (Q7D9B8_MYCTO | Q7D9B8)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
	GO:0000160	phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2pmu)

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	2pmu
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	P71814_MYCTU \| P71814
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	Q7D9B8_MYCTO \| Q7D9B8
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		Protein-protein Interaction	:	DIP
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		Interatomic Contacts of Structural Units	:	CSU
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	P71814_MYCTU \| P71814
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q7D9B8_MYCTO \| Q7D9B8
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	P71814_MYCTU \| P71814	:	3r0j 5ed4

(no "Related Entries Specified in the PDB File" available for 2PMU)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 18)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 19)

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Still Images

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File