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2PMU
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF PHOP
Authors
:
S. Wang
Date
:
23 Apr 07 (Deposition) - 26 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Winged Helix-Tun-Helx, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wang, J. Engohang-Ndong, I. Smith
Structure Of The Dna-Binding Domain Of The Response Regulator Phop From Mycobacterium Tuberculosis
Biochemistry V. 46 14751 2007
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCINE (GLYa)
2b: GLYCINE (GLYb)
2c: GLYCINE (GLYc)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
5a: UNKNOWN ATOM OR ION (UNXa)
5b: UNKNOWN ATOM OR ION (UNXb)
5c: UNKNOWN ATOM OR ION (UNXc)
5d: UNKNOWN ATOM OR ION (UNXd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GLY
3
Mod. Amino Acid
GLYCINE
3
K
3
Ligand/Ion
POTASSIUM ION
4
PO4
4
Ligand/Ion
PHOSPHATE ION
5
UNX
4
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:184 , LYS A:197 , HIS A:201 , HOH A:6032 , TYR D:184 , LYS D:197 , HIS D:201 , HOH D:6029
BINDING SITE FOR RESIDUE PO4 D 1001
02
AC2
SOFTWARE
ARG D:231 , HIS D:234 , THR D:235 , ARG D:237 , HOH D:6069 , HOH D:6076 , HOH D:6107
BINDING SITE FOR RESIDUE PO4 D 1002
03
AC3
SOFTWARE
ARG B:183 , HOH B:5044 , ARG E:183
BINDING SITE FOR RESIDUE PO4 E 1003
04
AC4
SOFTWARE
ARG A:231 , HIS A:234 , THR A:235 , HOH A:6068 , HOH A:6083
BINDING SITE FOR RESIDUE PO4 A 1004
05
AC5
SOFTWARE
HIS A:201 , HOH A:6053 , ASP D:200 , HIS D:201 , TRP D:203
BINDING SITE FOR RESIDUE K D 2001
06
AC6
SOFTWARE
ASP A:200 , HIS A:201 , TRP A:203 , HOH A:6053 , HIS D:201
BINDING SITE FOR RESIDUE K A 2002
07
AC7
SOFTWARE
ASN B:148 , ARG B:150 , ASN E:148 , ARG E:150
BINDING SITE FOR RESIDUE K E 2003
08
AC8
SOFTWARE
ARG A:204 , PHE A:207 , HOH A:6093 , ASN E:148
BINDING SITE FOR RESIDUE CL E 3001
09
AC9
SOFTWARE
ASN B:148 , ARG D:204 , HOH E:5048
BINDING SITE FOR RESIDUE CL D 3004
10
BC1
SOFTWARE
SER B:216 , ASP C:155 , GLU C:245
BINDING SITE FOR RESIDUE GLY B 4001
11
BC2
SOFTWARE
ARG C:150 , HOH C:306 , ASP E:200 , HIS E:201 , TRP E:203 , ARG E:204
BINDING SITE FOR RESIDUE GLY B 4002
12
BC3
SOFTWARE
ASP B:200 , HIS B:201 , TRP B:203 , ARG B:204
BINDING SITE FOR RESIDUE GLY B 4003
13
BC4
SOFTWARE
GLY B:4002 , HIS E:201
BINDING SITE FOR RESIDUE UNX E 5001
14
BC5
SOFTWARE
HIS B:201
BINDING SITE FOR RESIDUE UNX B 5002
15
BC6
SOFTWARE
GLU D:229 , SER F:219 , ARG F:222 , HOH F:271
BINDING SITE FOR RESIDUE UNX D 6001
16
BC7
SOFTWARE
GLU A:229 , SER C:219 , ARG C:222 , HOH C:269
BINDING SITE FOR RESIDUE UNX A 6002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2pmua_ (A:)
1b: SCOP_d2pmub_ (B:)
1c: SCOP_d2pmuc_ (C:)
1d: SCOP_d2pmud_ (D:)
1e: SCOP_d2pmue_ (E:)
1f: SCOP_d2pmuf_ (F:)
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)
Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
C-terminal effector domain of the bipartite response regulators
(45)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Mycobacterium tuberculosis [TaxId: 83332]
(2)
1a
d2pmua_
A:
1b
d2pmub_
B:
1c
d2pmuc_
C:
1d
d2pmud_
D:
1e
d2pmue_
E:
1f
d2pmuf_
F:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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