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(-) Description

Title :  CRYSTAL STRUCTURE OF PCNA123 HETEROTRIMER.
 
Authors :  V. Hlinkova, H. Ling
Date :  07 Nov 06  (Deposition) - 18 Dec 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  D,E,F  (1x)
Biol. Unit 2:  A,B,C  (1x)
Biol. Unit 3:  G,H,I  (1x)
Keywords :  Protein-Protein Interaction, Pcna123 Heterotrimer, Pcna12 Heterodimer, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Hlinkova, G. Xing, J. Bauer, Y. J. Shin, I. Dionne, K. R. Rajashankar S. D. Bell, H. Ling
Structures Of Monomeric, Dimeric And Trimeric Pcna: Pcna-Ring Assembly And Opening.
Acta Crystallogr. , Sect. D V. 64 941 2008
PubMed-ID: 18703842  |  Reference-DOI: 10.1107/S0907444908021665

(-) Compounds

Molecule 1 - DNA POLYMERASE SLIDING CLAMP B
    ChainsD, A, G
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET33B
    Expression System StrainBL 21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePCNB, PCNA-2
    MutationYES
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid273057
    StrainP2
    SynonymPROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG B, PCNA B
 
Molecule 2 - DNA POLYMERASE SLIDING CLAMP C
    ChainsE, B, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET11A
    Expression System StrainBL 21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePCNC, PCNA-2
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid273057
    StrainP2
    SynonymPROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG C, PCNA C
 
Molecule 3 - DNA POLYMERASE SLIDING CLAMP A
    ChainsF, C, I
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET30A
    Expression System StrainBL 21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePCNA, PCNA-1
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid273057
    StrainP2
    SynonymPROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG A, PCNA A

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit ABCDEFGHI
Biological Unit 1 (1x)   DEF   
Biological Unit 2 (1x)ABC      
Biological Unit 3 (1x)      GHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 56)

Asymmetric Unit (3, 56)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2BR54Ligand/IonBROMIDE ION
3K1Ligand/IonPOTASSIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
17PG-1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2BR-1Ligand/IonBROMIDE ION
3K-1Ligand/IonPOTASSIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
17PG-1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2BR-1Ligand/IonBROMIDE ION
3K-1Ligand/IonPOTASSIUM ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2BR-1Ligand/IonBROMIDE ION
3K-1Ligand/IonPOTASSIUM ION

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR D:31 , GLU D:32BINDING SITE FOR RESIDUE BR D 3015
02AC2SOFTWAREASN D:17 , ASN D:21 , LYS D:210BINDING SITE FOR RESIDUE BR D 3016
03AC3SOFTWAREARG D:51 , PRO D:53BINDING SITE FOR RESIDUE BR D 3028
04AC4SOFTWARELYS D:129 , GLU F:54BINDING SITE FOR RESIDUE BR D 3037
05AC5SOFTWAREPHE D:215 , SER D:216 , ALA D:217 , ALA D:235 , VAL D:236BINDING SITE FOR RESIDUE BR D 3039
06AC6SOFTWAREASN E:27 , SER E:119 , THR E:120BINDING SITE FOR RESIDUE BR E 3001
07AC7SOFTWAREGLU E:128 , PHE E:129 , PRO E:130BINDING SITE FOR RESIDUE BR E 3013
08AC8SOFTWARELEU E:127 , GLN H:116BINDING SITE FOR RESIDUE BR E 3017
09AC9SOFTWAREASN E:77 , HOH E:3069BINDING SITE FOR RESIDUE BR E 3022
10BC1SOFTWAREARG E:209 , HOH E:3116BINDING SITE FOR RESIDUE BR E 3040
11BC2SOFTWAREPRO E:224BINDING SITE FOR RESIDUE BR E 3049
12BC3SOFTWAREASN E:94 , LYS E:97BINDING SITE FOR RESIDUE BR E 3050
13BC4SOFTWARELYS F:30 , GLN F:31 , GLU F:64BINDING SITE FOR RESIDUE BR F 3002
14BC5SOFTWAREVAL F:244BINDING SITE FOR RESIDUE BR F 3005
15BC6SOFTWARELYS F:193BINDING SITE FOR RESIDUE BR F 3006
16BC7SOFTWARESER F:206 , LYS F:209BINDING SITE FOR RESIDUE BR F 3012
17BC8SOFTWARESER F:144BINDING SITE FOR RESIDUE BR F 3021
18BC9SOFTWARESER F:131 , THR F:133 , ASP F:185BINDING SITE FOR RESIDUE BR F 3023
19CC1SOFTWAREASN F:50 , GLY F:233 , LYS F:235BINDING SITE FOR RESIDUE BR F 3024
20CC2SOFTWAREGLN F:225 , THR F:237BINDING SITE FOR RESIDUE BR F 3030
21CC3SOFTWARESER D:107 , SER F:135BINDING SITE FOR RESIDUE BR F 3034
22CC4SOFTWAREASN F:50BINDING SITE FOR RESIDUE BR F 3041
23CC5SOFTWAREASN A:17 , LYS A:210BINDING SITE FOR RESIDUE BR A 3033
24CC6SOFTWARELYS A:76BINDING SITE FOR RESIDUE BR A 3043
25CC7SOFTWAREARG A:51 , PRO A:53BINDING SITE FOR RESIDUE BR A 3044
26CC8SOFTWAREGLY A:239BINDING SITE FOR RESIDUE BR A 3046
27CC9SOFTWARETRP A:244BINDING SITE FOR RESIDUE BR A 3047
28DC1SOFTWARELYS B:132 , GLU B:187BINDING SITE FOR RESIDUE BR B 3036
29DC2SOFTWAREGLU B:74 , ASN B:77 , HOH B:3058BINDING SITE FOR RESIDUE BR B 3038
30DC3SOFTWARELYS E:66BINDING SITE FOR RESIDUE BR B 3053
31DC4SOFTWAREILE C:44 , VAL C:244BINDING SITE FOR RESIDUE BR C 3008
32DC5SOFTWARELYS C:193BINDING SITE FOR RESIDUE BR C 3009
33DC6SOFTWARELYS C:140 , SER C:206 , LYS C:209BINDING SITE FOR RESIDUE BR C 3018
34DC7SOFTWARESER C:131 , THR C:133 , ASP C:185BINDING SITE FOR RESIDUE BR C 3029
35DC8SOFTWAREILE C:124 , THR C:237BINDING SITE FOR RESIDUE BR C 3035
36DC9SOFTWARELYS C:30 , GLN C:31 , GLU C:64BINDING SITE FOR RESIDUE BR C 3054
37EC1SOFTWARELYS G:76BINDING SITE FOR RESIDUE BR G 3045
38EC2SOFTWAREASN G:17 , ASN G:21 , LYS G:210BINDING SITE FOR RESIDUE BR G 3052
39EC3SOFTWAREARG H:244 , HOH H:4004BINDING SITE FOR RESIDUE BR H 3004
40EC4SOFTWAREGLU H:74 , ASN H:77BINDING SITE FOR RESIDUE BR H 3014
41EC5SOFTWARELEU H:127 , LYS H:226 , TYR H:240BINDING SITE FOR RESIDUE BR H 3025
42EC6SOFTWAREASN H:27 , THR H:120BINDING SITE FOR RESIDUE BR H 3051
43EC7SOFTWARE7PG H:2001BINDING SITE FOR RESIDUE K H 4001
44EC8SOFTWAREARG H:44 , VAL H:45 , THR H:120 , GLN H:121 , TYR H:240 , K H:4001BINDING SITE FOR RESIDUE 7PG H 2001
45EC9SOFTWARELYS I:30 , GLN I:31 , GLU I:64BINDING SITE FOR RESIDUE BR I 3003
46FC1SOFTWARELYS I:193BINDING SITE FOR RESIDUE BR I 3007
47FC2SOFTWARELYS I:243 , VAL I:244BINDING SITE FOR RESIDUE BR I 3011
48FC3SOFTWARELYS I:209BINDING SITE FOR RESIDUE BR I 3019
49FC4SOFTWAREARG I:53 , GLU I:54BINDING SITE FOR RESIDUE BR I 3032
50FC5SOFTWAREGLN I:72 , MET I:75BINDING SITE FOR RESIDUE BR I 3048

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NTI)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys D:185 -Pro D:186
2Lys A:185 -Pro A:186
3Lys G:185 -Pro G:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NTI)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA2_SULSO33-56
 
 
  3B:34-57
E:34-57
H:34-57
PCNA3_SULSO33-56
 
 
  3C:33-56
F:33-56
I:33-56
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA2_SULSO33-56
 
 
  1-
E:34-57
-
PCNA3_SULSO33-56
 
 
  1-
F:33-56
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA2_SULSO33-56
 
 
  1B:34-57
-
-
PCNA3_SULSO33-56
 
 
  1C:33-56
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA2_SULSO33-56
 
 
  1-
-
H:34-57
PCNA3_SULSO33-56
 
 
  1-
-
I:33-56

(-) Exons   (0, 0)

(no "Exon" information available for 2NTI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with PCNA1_SULSO | P57766 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
          PCNA1_SULSO     1 MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPR 248
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhh....eeeeeee..eeeeeee.....eeeeeeee.hhh.eee....eeeeee...hhhhhhhhh...eeeeeee...eeeeeeee.....eeeeeee.eeee............eeeeehhhhhhhhhhhhhhhh.eeeeee....eeeee.....eeeeeeee..ee.eeee....eeeeehhhhhhhhhhhhhh...eeeee.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti A   1 MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPR 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        

Chain B from PDB  Type:PROTEIN  Length:245
 aligned with PCNA2_SULSO | Q97Z84 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:245
                             1                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239     
          PCNA2_SULSO     - -MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRA 244
               SCOP domains d2ntib1 B:1-127 automated matches                                                                                              d2ntib2 B:128-245 automated matches                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eeee....eeeeeehhhhhhhhh......eeeeee...eeeeeee...eeeeeee.................eeeeeehhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee........eeee...eeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeeehhheeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------PCNA_1  PDB: B:34-57    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti B   1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRA 245
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     

Chain C from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ntic1 C:1-126 automated matches                                                                                             d2ntic2 C:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ntiC00 C:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhh.eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeee.....eeeeeee...eeeeeee.................eeeeeehhhhhhhhhhhhh...eeeeee...eeeeee....eeeeeee.......eeee...eeeeeehhhhhhhhhhhhh..eeeeee.....eeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------PCNA_1  PDB: C:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti C   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain D from PDB  Type:PROTEIN  Length:249
 aligned with PCNA1_SULSO | P57766 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
          PCNA1_SULSO     1 MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhh....eeeeeee..eeeeeee.....eeeeeeee.hhh.eeee...eeeeee...hhhhhhhhh...eeeeeee...eeeeeeee.....eeeeeee.eee.............eeeeehhhhhhhhhhhhhhhh.eeeeee....eeeee.....eeeeeeee..ee.eeee....eeeeehhhhhhhhhhhhhh...eeeee.....eeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti D   1 MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         

Chain E from PDB  Type:PROTEIN  Length:244
 aligned with PCNA2_SULSO | Q97Z84 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:246
                             1                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239      
          PCNA2_SULSO     - -MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245
               SCOP domains d2ntie1 E:1-127 automated matches                                                                                              d2ntie2 E:128-246 automated matches                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eeee....eeeeeehhhhhhhhh......eeeeee...eeeeeee...eeeeeee..........--.....eeeeeehhhhhhhhhhhhh...eeeeeee..eeeeeee...eeeeeee........eeee...eeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeeehhheeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------PCNA_1  PDB: E:34-57    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nti E   1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPP--NLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 246
                                    10        20        30        40        50        60        70        80        90       100       110       120  |  | 130       140       150       160       170       180       190       200       210       220       230       240      
                                                                                                                                                    123  |                                                                                                                        
                                                                                                                                                       126                                                                                                                        

Chain F from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ntif1 F:1-126 automated matches                                                                                             d2ntif2 F:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ntiF00 F:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhh.eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeee.....eeeeeee....eeeeee.................eeeeeehhhhhhhhhhhhh...eeeeee...eeeeee....eeeeeee.....eeeeee...eeeeeehhhhhhhhhhhhh..eeeeee.....eeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------PCNA_1  PDB: F:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti F   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain G from PDB  Type:PROTEIN  Length:249
 aligned with PCNA1_SULSO | P57766 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
          PCNA1_SULSO     1 MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeee...hhhhhhhhh....eeeeee...eeeeeee.....eeeeeeeeeeee.............eeeeehhhhhhhhhhhhhhhh.eeeeeee..eeeeee.....eeeeeeee..ee.eeee....eeeeehhhhhhhhhhhhhh...eeeee.....eeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti G   1 MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         

Chain H from PDB  Type:PROTEIN  Length:246
 aligned with PCNA2_SULSO | Q97Z84 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:246
                             1                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239      
          PCNA2_SULSO     - -MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245
               SCOP domains d2ntih1 H:1-127 automated matches                                                                                              d2ntih2 H:128-246 automated matches                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhh...eeeeeee..eeeeeee.....eeeeeeee.hhh.eee.....eeeeeehhhhhhhhh......eeeeee...eeeeeee...eeeeeee.................eeeeeehhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeeeeee........eeee...eeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeeeehhheeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------PCNA_1  PDB: H:34-57    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2nti H   1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      

Chain I from PDB  Type:PROTEIN  Length:242
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ntii1 I:1-126 automated matches                                                                                             d2ntii2 I:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ntiI00 I:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeee.....eeeeeee...eeeeeee..........--.....eeeeeehhhhhhhhhhhhh...eeeeee...eeeeee....eeeeeee.......eeee...eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------PCNA_1  PDB: I:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nti I   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIP--NLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120 |  |  130       140       150       160       170       180       190       200       210       220       230       240    
                                                                                                                                                   122  |                                                                                                                       
                                                                                                                                                      125                                                                                                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
1ad2ntib1B:1-127
1bd2ntic1C:1-126
1cd2ntic2C:127-244
1dd2ntie1E:1-127
1ed2ntie2E:128-246
1fd2ntif1F:1-126
1gd2ntif2F:127-244
1hd2ntih1H:1-127
1id2ntih2H:128-246
1jd2ntii1I:1-126
1kd2ntii2I:127-244
1ld2ntib2B:128-245

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NTI)

(-) Gene Ontology  (6, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,D,G   (PCNA1_SULSO | P57766)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030337    DNA polymerase processivity factor activity    An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006272    leading strand elongation    The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
cellular component
    GO:0043626    PCNA complex    A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.

Chain B,E,H   (PCNA2_SULSO | Q97Z84)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030337    DNA polymerase processivity factor activity    An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006272    leading strand elongation    The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
cellular component
    GO:0043626    PCNA complex    A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.

Chain C,F,I   (PCNA3_SULSO | P57765)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030337    DNA polymerase processivity factor activity    An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006272    leading strand elongation    The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
cellular component
    GO:0043626    PCNA complex    A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCNA1_SULSO | P577662hii 2hik 2io4 2ix2 2izo 3fds
        PCNA2_SULSO | Q97Z842hii 2hik 2io4 2ix2 2izo 3fds
        PCNA3_SULSO | P577652hii 2hik 2ijx 2ix2

(-) Related Entries Specified in the PDB File

2io4 CRYSTAL STRUCTURE OF PCNA12 DIMER FROM SULFOLOBUS SOLFATARICUS.
2ix2 CRYSTAL STRUCTURE OF PCNA123 HETEROTRIMER FORM SULFOLOBUS SOLFATARICUS.
2ixj CRYSTAL STRUCTURE OF PCNA3 FROM SULFOLOBUS SOLFATARICUS.
2izo CRYSTAL STRUCTURE OF PCNA12 DIMER WITH FEN1 FROM SULFOLOBUS SOLFATARICUS.