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2NTI
Asym. Unit
Info
Asym.Unit (380 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (130 KB)
Biol.Unit 3 (129 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCNA123 HETEROTRIMER.
Authors
:
V. Hlinkova, H. Ling
Date
:
07 Nov 06 (Deposition) - 18 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: G,H,I (1x)
Keywords
:
Protein-Protein Interaction, Pcna123 Heterotrimer, Pcna12 Heterodimer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Hlinkova, G. Xing, J. Bauer, Y. J. Shin, I. Dionne, K. R. Rajashankar S. D. Bell, H. Ling
Structures Of Monomeric, Dimeric And Trimeric Pcna: Pcna-Ring Assembly And Opening.
Acta Crystallogr. , Sect. D V. 64 941 2008
[
close entry info
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Hetero Components
(3, 56)
Info
All Hetero Components
1a: 2,5,8,11,14,17,20,23-OCTAOXAPENTAC... (7PGa)
2a: BROMIDE ION (BRa)
2aa: BROMIDE ION (BRaa)
2ab: BROMIDE ION (BRab)
2ac: BROMIDE ION (BRac)
2ad: BROMIDE ION (BRad)
2ae: BROMIDE ION (BRae)
2af: BROMIDE ION (BRaf)
2ag: BROMIDE ION (BRag)
2ah: BROMIDE ION (BRah)
2ai: BROMIDE ION (BRai)
2aj: BROMIDE ION (BRaj)
2ak: BROMIDE ION (BRak)
2al: BROMIDE ION (BRal)
2am: BROMIDE ION (BRam)
2an: BROMIDE ION (BRan)
2ao: BROMIDE ION (BRao)
2ap: BROMIDE ION (BRap)
2aq: BROMIDE ION (BRaq)
2ar: BROMIDE ION (BRar)
2as: BROMIDE ION (BRas)
2at: BROMIDE ION (BRat)
2au: BROMIDE ION (BRau)
2av: BROMIDE ION (BRav)
2aw: BROMIDE ION (BRaw)
2ax: BROMIDE ION (BRax)
2ay: BROMIDE ION (BRay)
2az: BROMIDE ION (BRaz)
2b: BROMIDE ION (BRb)
2ba: BROMIDE ION (BRba)
2bb: BROMIDE ION (BRbb)
2c: BROMIDE ION (BRc)
2d: BROMIDE ION (BRd)
2e: BROMIDE ION (BRe)
2f: BROMIDE ION (BRf)
2g: BROMIDE ION (BRg)
2h: BROMIDE ION (BRh)
2i: BROMIDE ION (BRi)
2j: BROMIDE ION (BRj)
2k: BROMIDE ION (BRk)
2l: BROMIDE ION (BRl)
2m: BROMIDE ION (BRm)
2n: BROMIDE ION (BRn)
2o: BROMIDE ION (BRo)
2p: BROMIDE ION (BRp)
2q: BROMIDE ION (BRq)
2r: BROMIDE ION (BRr)
2s: BROMIDE ION (BRs)
2t: BROMIDE ION (BRt)
2u: BROMIDE ION (BRu)
2v: BROMIDE ION (BRv)
2w: BROMIDE ION (BRw)
2x: BROMIDE ION (BRx)
2y: BROMIDE ION (BRy)
2z: BROMIDE ION (BRz)
3a: POTASSIUM ION (Ka)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7PG
1
Ligand/Ion
2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2
BR
54
Ligand/Ion
BROMIDE ION
3
K
1
Ligand/Ion
POTASSIUM ION
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:31 , GLU D:32
BINDING SITE FOR RESIDUE BR D 3015
02
AC2
SOFTWARE
ASN D:17 , ASN D:21 , LYS D:210
BINDING SITE FOR RESIDUE BR D 3016
03
AC3
SOFTWARE
ARG D:51 , PRO D:53
BINDING SITE FOR RESIDUE BR D 3028
04
AC4
SOFTWARE
LYS D:129 , GLU F:54
BINDING SITE FOR RESIDUE BR D 3037
05
AC5
SOFTWARE
PHE D:215 , SER D:216 , ALA D:217 , ALA D:235 , VAL D:236
BINDING SITE FOR RESIDUE BR D 3039
06
AC6
SOFTWARE
ASN E:27 , SER E:119 , THR E:120
BINDING SITE FOR RESIDUE BR E 3001
07
AC7
SOFTWARE
GLU E:128 , PHE E:129 , PRO E:130
BINDING SITE FOR RESIDUE BR E 3013
08
AC8
SOFTWARE
LEU E:127 , GLN H:116
BINDING SITE FOR RESIDUE BR E 3017
09
AC9
SOFTWARE
ASN E:77 , HOH E:3069
BINDING SITE FOR RESIDUE BR E 3022
10
BC1
SOFTWARE
ARG E:209 , HOH E:3116
BINDING SITE FOR RESIDUE BR E 3040
11
BC2
SOFTWARE
PRO E:224
BINDING SITE FOR RESIDUE BR E 3049
12
BC3
SOFTWARE
ASN E:94 , LYS E:97
BINDING SITE FOR RESIDUE BR E 3050
13
BC4
SOFTWARE
LYS F:30 , GLN F:31 , GLU F:64
BINDING SITE FOR RESIDUE BR F 3002
14
BC5
SOFTWARE
VAL F:244
BINDING SITE FOR RESIDUE BR F 3005
15
BC6
SOFTWARE
LYS F:193
BINDING SITE FOR RESIDUE BR F 3006
16
BC7
SOFTWARE
SER F:206 , LYS F:209
BINDING SITE FOR RESIDUE BR F 3012
17
BC8
SOFTWARE
SER F:144
BINDING SITE FOR RESIDUE BR F 3021
18
BC9
SOFTWARE
SER F:131 , THR F:133 , ASP F:185
BINDING SITE FOR RESIDUE BR F 3023
19
CC1
SOFTWARE
ASN F:50 , GLY F:233 , LYS F:235
BINDING SITE FOR RESIDUE BR F 3024
20
CC2
SOFTWARE
GLN F:225 , THR F:237
BINDING SITE FOR RESIDUE BR F 3030
21
CC3
SOFTWARE
SER D:107 , SER F:135
BINDING SITE FOR RESIDUE BR F 3034
22
CC4
SOFTWARE
ASN F:50
BINDING SITE FOR RESIDUE BR F 3041
23
CC5
SOFTWARE
ASN A:17 , LYS A:210
BINDING SITE FOR RESIDUE BR A 3033
24
CC6
SOFTWARE
LYS A:76
BINDING SITE FOR RESIDUE BR A 3043
25
CC7
SOFTWARE
ARG A:51 , PRO A:53
BINDING SITE FOR RESIDUE BR A 3044
26
CC8
SOFTWARE
GLY A:239
BINDING SITE FOR RESIDUE BR A 3046
27
CC9
SOFTWARE
TRP A:244
BINDING SITE FOR RESIDUE BR A 3047
28
DC1
SOFTWARE
LYS B:132 , GLU B:187
BINDING SITE FOR RESIDUE BR B 3036
29
DC2
SOFTWARE
GLU B:74 , ASN B:77 , HOH B:3058
BINDING SITE FOR RESIDUE BR B 3038
30
DC3
SOFTWARE
LYS E:66
BINDING SITE FOR RESIDUE BR B 3053
31
DC4
SOFTWARE
ILE C:44 , VAL C:244
BINDING SITE FOR RESIDUE BR C 3008
32
DC5
SOFTWARE
LYS C:193
BINDING SITE FOR RESIDUE BR C 3009
33
DC6
SOFTWARE
LYS C:140 , SER C:206 , LYS C:209
BINDING SITE FOR RESIDUE BR C 3018
34
DC7
SOFTWARE
SER C:131 , THR C:133 , ASP C:185
BINDING SITE FOR RESIDUE BR C 3029
35
DC8
SOFTWARE
ILE C:124 , THR C:237
BINDING SITE FOR RESIDUE BR C 3035
36
DC9
SOFTWARE
LYS C:30 , GLN C:31 , GLU C:64
BINDING SITE FOR RESIDUE BR C 3054
37
EC1
SOFTWARE
LYS G:76
BINDING SITE FOR RESIDUE BR G 3045
38
EC2
SOFTWARE
ASN G:17 , ASN G:21 , LYS G:210
BINDING SITE FOR RESIDUE BR G 3052
39
EC3
SOFTWARE
ARG H:244 , HOH H:4004
BINDING SITE FOR RESIDUE BR H 3004
40
EC4
SOFTWARE
GLU H:74 , ASN H:77
BINDING SITE FOR RESIDUE BR H 3014
41
EC5
SOFTWARE
LEU H:127 , LYS H:226 , TYR H:240
BINDING SITE FOR RESIDUE BR H 3025
42
EC6
SOFTWARE
ASN H:27 , THR H:120
BINDING SITE FOR RESIDUE BR H 3051
43
EC7
SOFTWARE
7PG H:2001
BINDING SITE FOR RESIDUE K H 4001
44
EC8
SOFTWARE
ARG H:44 , VAL H:45 , THR H:120 , GLN H:121 , TYR H:240 , K H:4001
BINDING SITE FOR RESIDUE 7PG H 2001
45
EC9
SOFTWARE
LYS I:30 , GLN I:31 , GLU I:64
BINDING SITE FOR RESIDUE BR I 3003
46
FC1
SOFTWARE
LYS I:193
BINDING SITE FOR RESIDUE BR I 3007
47
FC2
SOFTWARE
LYS I:243 , VAL I:244
BINDING SITE FOR RESIDUE BR I 3011
48
FC3
SOFTWARE
LYS I:209
BINDING SITE FOR RESIDUE BR I 3019
49
FC4
SOFTWARE
ARG I:53 , GLU I:54
BINDING SITE FOR RESIDUE BR I 3032
50
FC5
SOFTWARE
GLN I:72 , MET I:75
BINDING SITE FOR RESIDUE BR I 3048
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (B:34-57,E:34-57,H:34-57,C:33-56,F:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA2_SULSO
33-56
3
B:34-57
E:34-57
H:34-57
PCNA3_SULSO
33-56
3
C:33-56
F:33-56
I:33-56
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2ntib1 (B:1-127)
1b: SCOP_d2ntic1 (C:1-126)
1c: SCOP_d2ntic2 (C:127-244)
1d: SCOP_d2ntie1 (E:1-127)
1e: SCOP_d2ntie2 (E:128-246)
1f: SCOP_d2ntif1 (F:1-126)
1g: SCOP_d2ntif2 (F:127-244)
1h: SCOP_d2ntih1 (H:1-127)
1i: SCOP_d2ntih2 (H:128-246)
1j: SCOP_d2ntii1 (I:1-126)
1k: SCOP_d2ntii2 (I:127-244)
1l: SCOP_d2ntib2 (B:128-245)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Sulfolobus solfataricus [TaxId: 273057]
(3)
1a
d2ntib1
B:1-127
1b
d2ntic1
C:1-126
1c
d2ntic2
C:127-244
1d
d2ntie1
E:1-127
1e
d2ntie2
E:128-246
1f
d2ntif1
F:1-126
1g
d2ntif2
F:127-244
1h
d2ntih1
H:1-127
1i
d2ntih2
H:128-246
1j
d2ntii1
I:1-126
1k
d2ntii2
I:127-244
1l
d2ntib2
B:128-245
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2ntiC00 (C:1-244)
1b: CATH_2ntiF00 (F:1-244)
1c: CATH_2ntiI00 (I:1-244)
View:
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Classes
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Sulfolobus solfataricus p2. Organism_taxid: 273057. Strain: p2.
(2)
1a
2ntiC00
C:1-244
1b
2ntiF00
F:1-244
1c
2ntiI00
I:1-244
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
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