Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PCNA3 MONOMER FROM SULFOLOBUS SOLFATARICUS.
 
Authors :  V. Hlinkova, H. Ling
Date :  01 Oct 06  (Deposition) - 16 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Pcna3 Subunit, Protein-Protein Interaction, Pcna123 Heterotrimer, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. Hlinkova, G. Xing, J. Bauer, Y. J. Shin, I. Dionne, K. R. Rajashankar S. D. Bell, H. Ling
Structures Of Monomeric, Dimeric And Trimeric Pcna: Pcna-Ring Assembly And Opening.
Acta Crystallogr. , Sect. D V. 64 941 2008
PubMed-ID: 18703842  |  Reference-DOI: 10.1107/S0907444908021665

(-) Compounds

Molecule 1 - DNA POLYMERASE SLIDING CLAMP A
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET30A
    Expression System StrainBL 21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePCNA, PCNA-1
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid273057
    StrainP2
    SynonymPROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG A, PCNA A

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 20)

Asymmetric Unit (1, 20)
No.NameCountTypeFull Name
1EDO20Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER B:135 , SER B:136 , ASP B:137 , ASP B:212 , ARG C:83BINDING SITE FOR RESIDUE EDO B 601
02AC2SOFTWAREASN A:110 , PHE C:69 , ASN C:70 , TYR C:73 , ARG C:112 , HOH C:632 , HOH C:634BINDING SITE FOR RESIDUE EDO C 602
03AC3SOFTWARESER C:135 , GLY C:138 , VAL C:174 , GLU C:175 , PHE C:176 , THR C:180 , GLY C:182 , HOH C:662BINDING SITE FOR RESIDUE EDO C 603
04AC4SOFTWARETYR A:73 , PHE A:109 , ASN A:110 , ASN C:110 , VAL C:111 , ARG C:112BINDING SITE FOR RESIDUE EDO A 604
05AC5SOFTWARESER B:211 , TYR B:213 , PHE B:227 , PHE B:228 , ASN B:229 , HOH B:712 , HOH B:728BINDING SITE FOR RESIDUE EDO B 605
06AC6SOFTWARETHR C:133 , SER C:211 , TYR C:213 , PHE C:227 , PHE C:228 , ASN C:229 , HOH C:670 , HOH C:715BINDING SITE FOR RESIDUE EDO C 606
07AC7SOFTWARELYS B:84 , GLU B:85 , SER B:104 , LEU C:210 , SER C:211 , ASP C:212 , ASN C:229 , GLU C:231BINDING SITE FOR RESIDUE EDO C 607
08AC8SOFTWAREVAL D:26 , GLU D:35 , LEU D:36 , VAL D:37 , GLU D:118 , HOH D:666BINDING SITE FOR RESIDUE EDO D 608
09AC9SOFTWAREGLN A:225 , THR A:237BINDING SITE FOR RESIDUE EDO A 609
10BC1SOFTWARESER D:211 , TYR D:213 , LYS D:215 , PHE D:227 , ASN D:229BINDING SITE FOR RESIDUE EDO D 610
11BC2SOFTWAREARG B:9 , ARG B:83 , LYS B:84 , VAL C:10 , ASP C:13 , LYS C:209 , HOH C:630BINDING SITE FOR RESIDUE EDO C 611
12BC3SOFTWAREILE B:102 , HOH B:751BINDING SITE FOR RESIDUE EDO B 612
13BC4SOFTWAREPHE B:109BINDING SITE FOR RESIDUE EDO B 613
14BC5SOFTWAREASN A:70 , GLN A:72 , TYR A:73 , LYS A:76BINDING SITE FOR RESIDUE EDO A 614
15BC6SOFTWAREEDO B:617 , ARG C:9 , ARG C:83BINDING SITE FOR RESIDUE EDO C 615
16BC7SOFTWAREVAL D:80 , ALA D:81 , LYS D:82 , ARG D:83 , GLU D:85BINDING SITE FOR RESIDUE EDO D 616
17BC8SOFTWAREVAL B:10 , ASP B:13 , LYS B:209 , HOH B:648 , ARG C:83 , LYS C:84 , EDO C:615BINDING SITE FOR RESIDUE EDO B 617
18BC9SOFTWAREILE C:44 , TYR C:196 , SER C:197 , LEU C:240 , ALA C:241 , PRO C:242 , LYS C:243 , VAL C:244BINDING SITE FOR RESIDUE EDO C 618
19CC1SOFTWAREPHE D:128 , SER D:131 , SER D:189BINDING SITE FOR RESIDUE EDO D 619
20CC2SOFTWARESER A:131 , GLU A:187 , LYS A:215 , LEU C:126 , GLN C:127 , PHE C:128BINDING SITE FOR RESIDUE EDO C 620

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IJX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn D:62 -Asp D:63
2Lys D:243 -Val D:244

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IJX)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA3_SULSO33-56
 
 
 
  4A:33-56
B:33-56
C:33-56
D:33-56
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA3_SULSO33-56
 
 
 
  1A:33-56
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA3_SULSO33-56
 
 
 
  1-
B:33-56
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA3_SULSO33-56
 
 
 
  1-
-
C:33-56
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PCNA_1PS01251 Proliferating cell nuclear antigen signature 1.PCNA3_SULSO33-56
 
 
 
  1-
-
-
D:33-56

(-) Exons   (0, 0)

(no "Exon" information available for 2IJX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ijxa1 A:1-126 automated matches                                                                                             d2ijxa2 A:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ijxA00 A:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhh.eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeeeeee..eeeeeee...eeeeeee.................eeeeeehhhhhhhhhhhh....eeeeeee..eeeeee......eeeee.....eeeeee...eeeeeehhhhhhhhhhhhhh.eeeeeee..eeeeeeee.hhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------PCNA_1  PDB: A:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ijx A   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ijxb1 B:1-126 automated matches                                                                                             d2ijxb2 B:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ijxB00 B:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhh.eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeeeeee..eeeeeee...eeeeeee.................eeeeeehhhhhhhhhhhhh...eeeeeee..eeeeee.......eee......eeeeee...eeeeeehhhhhhhhhhhhhh.eeeeeee..eeeeeeee.hhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------PCNA_1  PDB: B:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ijx B   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain C from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ijxc1 C:1-126 automated matches                                                                                             d2ijxc2 C:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ijxC00 C:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhh......eeeeeeee..eeeeeee....eeeeee.................eeeeeehhhhhhhhhhhhhhh.eeeeee....eeeee......eeee......eeeeee...eeeeeehhhhhhhhhhhhh..eeeeee.....eeeeee.hhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------PCNA_1  PDB: C:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ijx C   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain D from PDB  Type:PROTEIN  Length:244
 aligned with PCNA3_SULSO | P57765 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          PCNA3_SULSO     1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
               SCOP domains d2ijxd1 D:1-126 automated matches                                                                                             d2ijxd2 D:127-244 automated matches                                                                                    SCOP domains
               CATH domains 2ijxD00 D:1-244  [code=3.70.10.10, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhh...eeeeee...eeeeeee.....eeeeeeee.hhh.eee....eeeeeehhhhhhhhhh.....eeeeeeee..eeeeeee....eeeeee.................eeeeeehhhhhhhhhhhhh...eeeeee...eeeeee......eeeee.....eeeeee...eeeeeehhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------PCNA_1  PDB: D:33-56    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ijx D   1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
1ad2ijxa1A:1-126
1bd2ijxa2A:127-244
1cd2ijxb1B:1-126
1dd2ijxb2B:127-244
1ed2ijxc1C:1-126
1fd2ijxc2C:127-244
1gd2ijxd1D:1-126
1hd2ijxd2D:127-244

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IJX)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PCNA3_SULSO | P57765)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030337    DNA polymerase processivity factor activity    An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006272    leading strand elongation    The synthesis of DNA from a template strand in the 5' to 3' direction; leading strand elongation is continuous as it proceeds in the same direction as the replication fork.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
cellular component
    GO:0043626    PCNA complex    A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn D:62 - Asp D:63   [ RasMol ]  
    Lys D:243 - Val D:244   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2ijx
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PCNA3_SULSO | P57765
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PCNA3_SULSO | P57765
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCNA3_SULSO | P577652hii 2hik 2ix2 2nti

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2IJX)