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(-) Description

Title :  SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A/H-STATE
 
Authors :  A. Koglin, F. Loehr, V. V. Rogov, M. A. Marahiel, F. Bernhard, V. Doetsch
Date :  17 Mar 06  (Deposition) - 01 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (19x)
Keywords :  Three-Helix Bundle, Ligase/Transport Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Koglin, M. R. Mofid, F. Loehr, B. Schaefer, V. V. Rogov, M. -M. Blum, T. Mittag, M. A. Marahiel, F. Bernhard, V. Doetsch
Conformational Switches Modulate Protein Interactions In Peptide Antibiotic Synthetases
Science V. 312 273 2006
PubMed-ID: 16614225  |  Reference-DOI: 10.1126/SCIENCE.1122928
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYROCIDINE SYNTHETASE III
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE70
    Expression System StrainXL10
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentACYL CARRIER 3, TYCC3 THIOESTER DOMAIN
    GeneTYCC
    MutationYES
    Organism ScientificBREVIBACILLUS PARABREVIS
    Organism Taxid54914
    StrainATCC8185
    SynonymNON-RIBOSOMAL PEPTIDE SYNTHETASE PEPTIDYL CARRIER PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (19x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GDW)

(-) Sites  (0, 0)

(no "Site" information available for 2GDW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GDW)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARRIERPS50075 Carrier protein (CP) domain profile.TYCC_BREPA965-1040
2002-2077
3040-3115
4075-4150
5119-5194
6162-6237
  1-
-
A:10-83
-
-
-
2PHOSPHOPANTETHEINEPS00012 Phosphopantetheine attachment site.TYCC_BREPA995-1010
2032-2047
3070-3085
4105-4120
5149-5164
6192-6207
  1-
-
A:40-55
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2GDW)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:85
 aligned with TYCC_BREPA | O30409 from UniProtKB/Swiss-Prot  Length:6486

    Alignment length:87
                                  3038      3048      3058      3068      3078      3088      3098      3108       
          TYCC_BREPA   3029 EGKPVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATSG 3115
               SCOP domains d2  gdwa_ A: Peptidyl carrier protein (PCP), thioester domain                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--..........hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------CARRIER  PDB: A:10-83 UniProt: 3040-3115                                     PROSITE (1)
                PROSITE (2) -----------------------------------------PHOSPHOPANTETHEI------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------- Transcript
                2gdw A    1 MG--VTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRS   85
                             |  |    8        18        28        38        48        58        68        78       
                             2  3                                                                                  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GDW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GDW)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (TYCC_BREPA | O30409)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0031177    phosphopantetheine binding    Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
biological process
    GO:0017000    antibiotic biosynthetic process    The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYCC_BREPA | O304091dny 2gdx 2gdy 2ge1 2jgp 2k2q 2md9 4mrt

(-) Related Entries Specified in the PDB File

2gdx SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN H-STATE
2gdy SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A-STATE
2ge0 ACTIVE COMPLEX OF COENZYME A WITH THE PPTASE SFP (MODEL)
2ge1 PROTEIN COMPLEX OF A-STATE TYCC3-APO-PCP WITH THE PPTASE SFP (MODEL)