1DNY - JenaLib

Title :   SOLUTION STRUCTURE OF PCP, A PROTOTYPE FOR THE PEPTIDYL CARRIER DOMAINS OF MODULAR PEPTIDE SYNTHETASES

Authors :   T. Weber, R. Baumgartner, C. Renner, M. A. Marahiel, T. A. Holak

Date :   17 Dec 99 (Deposition) - 17 May 00 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (21x)

Keywords :   Four-Helix Bundle, Modular Enzyme, Domain, Flexible Region, 4'-Phosphopantetheinyl Cofactor, Modular Peptide Synthetases, Nonribosomal Peptide Synthesis, Peptidyl Carrier Protein (Pcp), Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Weber, R. Baumgartner, C. Renner, M. A. Marahiel, T. A. Holak
Solution Structure Of Pcp, A Prototype For The Peptidyl Carrier Domains Of Modular Peptide Synthetases.
Structure Fold. Des. V. 8 407 2000
PubMed-ID: 10801488 | Reference-DOI: 10.1016/S0969-2126(00)00120-9
(for further references see the PDB file header)

Compounds

Molecule 1 - NON-RIBOSOMAL PEPTIDE SYNTHETASE PEPTIDYL CARRIER PROTEIN
	Atcc	:	8185
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE70
	Expression System Taxid	:	562
	Fragment	:	TYCC3 THIOESTER DOMAIN
	Gene	:	TYCC
	Organism Scientific	:	BREVIBACILLUS BREVIS
	Organism Taxid	:	1393

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:76
 aligned with TYCC_BREPA | O30409 from UniProtKB/Swiss-Prot  Length:6486

    Alignment length:76
                                  3047      3057      3067      3077      3087      3097      3107      
          TYCC_BREPA   3038 YVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT 3113
               SCOP domains d1dnya_ A: Peptidyl carrier protein (PCP), thioester domain                  SCOP domains
               CATH domains 1dnyA00 A:8-83  [code=1.10.1200.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh....hhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --CARRIER  PDB: A:10-83 UniProt: 3040-3115                                   PROSITE (1)
                PROSITE (2) --------------------------------PHOSPHOPANTETHEI---------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------- Transcript
                1dny A    8 YVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT   83
                                    17        27        37        47        57        67        77

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

NMR Structure(hide GO term definitions)

Chain A (TYCC_BREPA | O30409)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016788	hydrolase activity, acting on ester bonds	Catalysis of the hydrolysis of any ester bond.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0031177	phosphopantetheine binding	Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
biological process
	GO:0017000	antibiotic biosynthetic process	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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