2JKN - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   DRAE ADHESIN IN COMPLEX WITH CHLORAMPHENICOL SUCCINATE ( TRIGONAL FORM)

Authors :   D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea

Date :   28 Aug 08 (Deposition) - 16 Dec 08 (Release) - 12 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (3x)
Biol. Unit 2: B  (3x)
Biol. Unit 3: C  (3x)
Biol. Unit 4: D  (3x)
Biol. Unit 5: E  (3x)
Biol. Unit 6: F  (3x)

Keywords :   Cell Adhesion, Upec, Drae, Daec, Adhesin, Fimbrium, Haemagglutinin, Cell Projection, Fimbrial Adhesin, Chloramphenicol Succinate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
A Structural Study Of The Interaction Between The Dr Haemagglutinin Drae And Derivatives Of Chloramphenicol
Acta Crystallogr. , Sect. D V. 65 513 2009
PubMed-ID: 19465765 | Reference-DOI: 10.1107/S0907444909005113

Molecule 1 - DR HEMAGGLUTININ STRUCTURAL SUBUNIT
	Cell Line	:	M15
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE-30
	Expression System Taxid	:	562
	Fragment	:	ADHESIN SUBUNIT, RESIDUES 23-160
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	IH11128
	Synonym	:	DRAE HAEMAGGLUTININ
	Variant	:	O75:K5:H

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (3x)	:	A
Biological Unit 2 (3x)	:		B
Biological Unit 3 (3x)	:			C
Biological Unit 4 (3x)	:				D
Biological Unit 5 (3x)	:					E
Biological Unit 6 (3x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 30)

No.	Name	Count	Type	Full Name
1	CL8	6	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 5 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 6 (3, 15)

No.	Name	Count	Type	Full Name
1	CL8	3	Ligand/Ion	CHLORAMPHENICOL SUCCINATE
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2004 , HOH A:2006 , HOH A:2117 , HOH A:2118 , HOH A:2119	BINDING SITE FOR RESIDUE SO4 A1139
02	AC2	SOFTWARE	ASP A:52 , GLY A:106 , SER A:107 , HOH A:2054 , HOH A:2120 , ASP D:89	BINDING SITE FOR RESIDUE SO4 A1140
03	AC3	SOFTWARE	ALA A:38 , PRO A:40 , ILE A:41 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26 , LEU D:49	BINDING SITE FOR RESIDUE CL8 A1141
04	AC4	SOFTWARE	PRO A:4 , SER A:5 , GLY A:6 , VAL A:15 , PRO A:125 , GLY A:126	BINDING SITE FOR RESIDUE EDO A1142
05	AC5	SOFTWARE	SER A:74 , ASN A:76 , ASP A:79 , PRO A:125 , HOH A:2121	BINDING SITE FOR RESIDUE EDO A1143
06	AC6	SOFTWARE	THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2004 , HOH B:2114 , HOH B:2115 , HOH B:2116	BINDING SITE FOR RESIDUE SO4 B1139
07	AC7	SOFTWARE	ASP B:52 , GLY B:106 , SER B:107 , HOH B:2054 , HOH B:2117 , ASP F:89 , ASN F:90	BINDING SITE FOR RESIDUE SO4 B1140
08	AC8	SOFTWARE	ALA B:38 , PRO B:40 , ILE B:41 , GLY B:42 , PRO B:43 , GLY B:113 , ILE B:114 , TYR B:115 , ARG F:22 , LEU F:26	BINDING SITE FOR RESIDUE CL8 B1141
09	AC9	SOFTWARE	SER B:5 , GLY B:6 , VAL B:15 , PRO B:125 , GLY B:126	BINDING SITE FOR RESIDUE EDO B1142
10	BC1	SOFTWARE	SER B:74 , ASN B:76 , ASP B:79 , PRO B:125 , HOH B:2118	BINDING SITE FOR RESIDUE EDO B1143
11	BC2	SOFTWARE	THR C:8 , GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2005 , HOH C:2007 , HOH C:2019 , HOH C:2111	BINDING SITE FOR RESIDUE SO4 C1139
12	BC3	SOFTWARE	ASP C:52 , GLY C:106 , SER C:107 , HOH C:2052 , HOH C:2054 , ASP E:89	BINDING SITE FOR RESIDUE SO4 C1140
13	BC4	SOFTWARE	ALA C:38 , PRO C:40 , ILE C:41 , GLY C:42 , PRO C:43 , GLY C:113 , ILE C:114 , TYR C:115 , ARG E:22 , LEU E:26 , LEU E:49	BINDING SITE FOR RESIDUE CL8 C1141
14	BC5	SOFTWARE	SER C:5 , GLY C:6 , VAL C:15 , THR C:16 , PRO C:125 , GLY C:126	BINDING SITE FOR RESIDUE EDO C1142
15	BC6	SOFTWARE	SER C:74 , ASN C:76 , ASP C:79 , PRO C:125 , HOH C:2112	BINDING SITE FOR RESIDUE EDO C1143
16	BC7	SOFTWARE	THR D:8 , GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2007 , HOH D:2023 , HOH D:2112	BINDING SITE FOR RESIDUE SO4 D1139
17	BC8	SOFTWARE	ASP A:89 , ASN A:90 , ASP D:52 , GLY D:106 , SER D:107 , HOH D:2113 , HOH D:2114	BINDING SITE FOR RESIDUE SO4 D1140
18	BC9	SOFTWARE	ARG A:22 , LEU A:26 , ALA D:38 , PRO D:40 , ILE D:41 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115	BINDING SITE FOR RESIDUE CL8 D1141
19	CC1	SOFTWARE	PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , PRO D:125 , GLY D:126	BINDING SITE FOR RESIDUE EDO D1142
20	CC2	SOFTWARE	SER D:74 , ASN D:76 , ASP D:79 , PRO D:125 , HOH D:2115	BINDING SITE FOR RESIDUE EDO D1143
21	CC3	SOFTWARE	THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2005 , HOH E:2006 , HOH E:2118 , HOH E:2119	BINDING SITE FOR RESIDUE SO4 E1139
22	CC4	SOFTWARE	ASP C:89 , ASN C:90 , ASP E:52 , GLY E:106 , SER E:107 , HOH E:2057 , HOH E:2120	BINDING SITE FOR RESIDUE SO4 E1140
23	CC5	SOFTWARE	ARG C:22 , LEU C:26 , ALA E:38 , PRO E:40 , ILE E:41 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114 , TYR E:115	BINDING SITE FOR RESIDUE CL8 E1141
24	CC6	SOFTWARE	PRO E:4 , SER E:5 , GLY E:6 , VAL E:15 , PRO E:125 , GLY E:126	BINDING SITE FOR RESIDUE EDO E1142
25	CC7	SOFTWARE	SER E:74 , ASN E:76 , ASP E:79 , PRO E:125 , HOH E:2121	BINDING SITE FOR RESIDUE EDO E1143
26	CC8	SOFTWARE	THR F:8 , GLY F:9 , THR F:10 , GLY F:24 , ASP F:25 , HOH F:2111 , HOH F:2112 , HOH F:2113	BINDING SITE FOR RESIDUE SO4 F1140
27	CC9	SOFTWARE	ASP B:89 , ASP F:52 , GLY F:106 , SER F:107 , HOH F:2051 , HOH F:2114	BINDING SITE FOR RESIDUE SO4 F1141
28	DC1	SOFTWARE	ARG B:22 , LEU B:26 , ALA F:38 , PRO F:40 , ILE F:41 , GLY F:42 , PRO F:43 , GLY F:113 , ILE F:114 , TYR F:115	BINDING SITE FOR RESIDUE CL8 F1142
29	DC2	SOFTWARE	PRO F:4 , SER F:5 , GLY F:6 , VAL F:15 , PRO F:125 , GLY F:126	BINDING SITE FOR RESIDUE EDO F1143
30	DC3	SOFTWARE	SER F:74 , ASN F:76 , ASP F:79 , PRO F:125 , HOH F:2115	BINDING SITE FOR RESIDUE EDO F1144

Asymmetric Unit

No.	Residues
1	A:19	-	A:51
2	B:19	-	B:51
3	C:19	-	C:51
4	D:19	-	D:51
5	E:19	-	E:51
6	F:19	-	F:51

(no "Cis Peptide Bond" information available for 2JKN)

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A/B/C/D/E/F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	B	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	C	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	D	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	E	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2JKN)

(no "Exon" information available for 2JKN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkna_ A: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jknA00 A:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn A   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain B from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jknb_ B: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jknB00 B:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn B   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain C from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jknc_ C: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jknC00 C:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn C   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain D from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jknd_ D: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jknD00 D:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn D   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain E from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkne_ E: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jknE00 E:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn E   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain F from PDB  Type:PROTEIN  Length:140
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:140
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 160
               SCOP domains d2jknf_ F: DraA/Afimbrial adhesin Afa-III                                                                                                    SCOP domains
               CATH domains 2jknF00 F:0-139 Afimbrial adhesin afa-iii.                                                                                                   CATH domains
           Pfam domains (1) --Adhesin_Dr-2jknF01 F:2-139                                                                                                                 Pfam domains (1)
           Pfam domains (2) --Adhesin_Dr-2jknF02 F:2-139                                                                                                                 Pfam domains (2)
           Pfam domains (3) --Adhesin_Dr-2jknF03 F:2-139                                                                                                                 Pfam domains (3)
           Pfam domains (4) --Adhesin_Dr-2jknF04 F:2-139                                                                                                                 Pfam domains (4)
           Pfam domains (5) --Adhesin_Dr-2jknF05 F:2-139                                                                                                                 Pfam domains (5)
           Pfam domains (6) --Adhesin_Dr-2jknF06 F:2-139                                                                                                                 Pfam domains (6)
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkn F   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 139
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Dr-family adhesin (11)

Protein domain: DraA/Afimbrial adhesin Afa-III (11)

Escherichia coli [TaxId: 562] (11)

1a	d2jkna_	A:
1b	d2jknb_	B:
1c	d2jknc_	C:
1d	d2jknd_	D:
1e	d2jkne_	E:
1f	d2jknf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Afimbrial adhesin afa-iii. (12)

Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h. Cell_line: m15. (4)

1a	2jknA00	A:0-138
1b	2jknB00	B:0-138
1c	2jknC00	C:0-138
1d	2jknD00	D:0-138
1e	2jknE00	E:0-138
1f	2jknF00	F:0-139

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Adhesin (36)

Family: Adhesin_Dr (9)

Escherichia coli (9)

1a	Adhesin_Dr-2jknF01	F:2-139
1b	Adhesin_Dr-2jknF02	F:2-139
1c	Adhesin_Dr-2jknF03	F:2-139
1d	Adhesin_Dr-2jknF04	F:2-139
1e	Adhesin_Dr-2jknF05	F:2-139
1f	Adhesin_Dr-2jknF06	F:2-139

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (DRAA_ECOLX | P24093)

cellular component
	GO:0009289		pilus		A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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	Cis Peptide Bonds
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	2jkn
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UniProtKB/Swiss-Prot
	DRAA_ECOLX \| P24093	:	1usq 1ut1 2jkj 2jkl 2w5p

1usq	COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL
1ut1	DRAE ADHESIN FROM ESCHERICHIA COLI
2jkj	DRAE ADHESIN IN COMPLEX WITH CHLORAMPHENICOL SUCCINATE
2jkl	DRAE ADHESIN IN COMPLEX WITH BROMAMPHENICOL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 30)

Sites (30, 30)

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (1, 1)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File