2JKJ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   DRAE ADHESIN IN COMPLEX WITH CHLORAMPHENICOL SUCCINATE

Authors :   D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea

Date :   28 Aug 08 (Deposition) - 16 Dec 08 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (3x)
Biol. Unit 2: B  (3x)
Biol. Unit 3: C  (3x)
Biol. Unit 4: D  (3x)
Biol. Unit 5: E  (3x)
Biol. Unit 6: F  (3x)

Keywords :   Cell Adhesion, Upec, Drae, Daec, Adhesin, Fimbrium, Haemagglutinin, Cell Projection, Fimbrial Adhesin, Chloramphenicol Succinate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
A Structural Study Of The Interaction Between The Dr Haemagglutinin Drae And Derivatives Of Chloramphenicol
Acta Crystallogr. , Sect. D V. 65 513 2009
PubMed-ID: 19465765 | Reference-DOI: 10.1107/S0907444909005113

Molecule 1 - DR HEMAGGLUTININ STRUCTURAL SUBUNIT
	Cell Line	:	M15
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE-30
	Expression System Taxid	:	562
	Fragment	:	ADHESIN SUBUNIT, RESIDUES 23-160
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	IH11128
	Synonym	:	DRAE HAEMAGGLUTININ
	Variant	:	O75:K5:H

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (3x)	:	A
Biological Unit 2 (3x)	:		B
Biological Unit 3 (3x)	:			C
Biological Unit 4 (3x)	:				D
Biological Unit 5 (3x)	:					E
Biological Unit 6 (3x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	CLM	6	Ligand/Ion	CHLORAMPHENICOL
2	SO4	15	Ligand/Ion	SULFATE ION
3	TH8	2	Ligand/Ion	THIAMPHENICOL

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	6	Ligand/Ion	SULFATE ION
3	TH8	-1	Ligand/Ion	THIAMPHENICOL

Biological Unit 2 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	9	Ligand/Ion	SULFATE ION
3	TH8	3	Ligand/Ion	THIAMPHENICOL

Biological Unit 3 (2, 9)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	6	Ligand/Ion	SULFATE ION
3	TH8	-1	Ligand/Ion	THIAMPHENICOL

Biological Unit 4 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	9	Ligand/Ion	SULFATE ION
3	TH8	3	Ligand/Ion	THIAMPHENICOL

Biological Unit 5 (2, 9)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	6	Ligand/Ion	SULFATE ION
3	TH8	-1	Ligand/Ion	THIAMPHENICOL

Biological Unit 6 (2, 12)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	SO4	9	Ligand/Ion	SULFATE ION
3	TH8	-1	Ligand/Ion	THIAMPHENICOL

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2004	BINDING SITE FOR RESIDUE SO4 A 1139
02	AC2	SOFTWARE	ASP A:89 , ASN A:90 , ASP D:52 , GLY D:106 , SER D:107	BINDING SITE FOR RESIDUE SO4 A 1140
03	AC3	SOFTWARE	PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , LEU D:26	BINDING SITE FOR RESIDUE CLM A 1141
04	AC4	SOFTWARE	THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2030	BINDING SITE FOR RESIDUE SO4 B 1139
05	AC5	SOFTWARE	ASP B:89 , ASP F:52 , GLY F:106 , SER F:107	BINDING SITE FOR RESIDUE SO4 B 1140
06	AC6	SOFTWARE	GLU B:17 , LYS B:18 , THR B:31 , ARG B:32 , GLY B:33 , HOH B:2031	BINDING SITE FOR RESIDUE SO4 B 1143
07	AC7	SOFTWARE	PRO B:40 , GLY B:42 , PRO B:43 , ILE B:111 , ILE B:114 , LEU F:26	BINDING SITE FOR RESIDUE CLM B 1141
08	AC8	SOFTWARE	GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2027	BINDING SITE FOR RESIDUE SO4 C 1139
09	AC9	SOFTWARE	ASP C:89 , ASN C:90 , ASP E:52 , GLY E:106 , SER E:107	BINDING SITE FOR RESIDUE SO4 C 1140
10	BC1	SOFTWARE	GLY C:42 , PRO C:43 , ILE C:111 , GLY C:113 , ILE C:114 , TYR C:115 , LEU E:26	BINDING SITE FOR RESIDUE CLM C 1141
11	BC2	SOFTWARE	GLY B:33 , GLN B:34 , THR B:36 , GLN C:55 , ASN C:103 , ASP C:104 , VAL C:105	BINDING SITE FOR RESIDUE TH8 B 1142
12	BC3	SOFTWARE	GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2027	BINDING SITE FOR RESIDUE SO4 D 1139
13	BC4	SOFTWARE	ASP A:52 , GLY A:106 , SER A:107 , ASP D:89 , ASN D:90	BINDING SITE FOR RESIDUE SO4 D 1140
14	BC5	SOFTWARE	GLU D:17 , LYS D:18 , ARG D:32 , HOH D:2028	BINDING SITE FOR RESIDUE SO4 D 1141
15	BC6	SOFTWARE	LEU A:26 , PRO D:40 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115	BINDING SITE FOR RESIDUE CLM D 1142
16	BC7	SOFTWARE	THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2001 , HOH E:2022	BINDING SITE FOR RESIDUE SO4 E 1139
17	BC8	SOFTWARE	ASP C:52 , GLY C:106 , SER C:107 , ASP E:89	BINDING SITE FOR RESIDUE SO4 E 1140
18	BC9	SOFTWARE	ARG C:22 , LEU C:26 , PRO E:40 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114	BINDING SITE FOR RESIDUE CLM E 1141
19	CC1	SOFTWARE	GLU F:17 , LYS F:18 , ARG F:32	BINDING SITE FOR RESIDUE SO4 F 1142
20	CC2	SOFTWARE	THR F:10 , GLY F:24 , ASP F:25 , HOH F:2029	BINDING SITE FOR RESIDUE SO4 F 1144
21	CC3	SOFTWARE	ASP B:52 , GLY B:106 , SER B:107 , ASP F:89 , ASN F:90	BINDING SITE FOR RESIDUE SO4 F 1145
22	CC4	SOFTWARE	LEU B:26 , GLY F:42 , PRO F:43 , ILE F:111 , GLY F:113 , ILE F:114 , TYR F:115	BINDING SITE FOR RESIDUE CLM F 1143
23	CC5	SOFTWARE	GLY D:33 , GLN D:34 , THR D:36 , ALA F:53 , GLN F:55 , ASP F:104 , VAL F:105	BINDING SITE FOR RESIDUE TH8 D 1143

Asymmetric Unit

No.	Residues
1	A:19	-	A:51
2	B:19	-	B:51
3	C:19	-	C:51
4	D:19	-	D:51
5	E:19	-	E:51
6	F:19	-	F:51

(no "Cis Peptide Bond" information available for 2JKJ)

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A/B/C/D/E/F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	B	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	C	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	D	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	E	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2JKJ)

(no "Exon" information available for 2JKJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkja_ A: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jkjA00 A:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj A   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain B from PDB  Type:PROTEIN  Length:138
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkjb_ B: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jkjB00 B:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee...............-..eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj B   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTD-SAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89 |      99       109       119       129         
                                                                                                                    89 |                                               
                                                                                                                      91

Chain C from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkjc_ C: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jkjC00 C:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj C   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain D from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkjd_ D: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jkjD00 D:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj D   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain E from PDB  Type:PROTEIN  Length:136
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d2jkje_ E: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 2jkjE00 E:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee.hhhh.---.eeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj E   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFE---FFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59      |  -|       79        89        99       109       119       129         
                                                                                             66  70

Chain F from PDB  Type:PROTEIN  Length:140
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:140
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 160
               SCOP domains d2jkjf_ F: DraA/Afimbrial adhesin Afa-III                                                                                                    SCOP domains
               CATH domains 2jkjF00 F:0-139 Afimbrial adhesin afa-iii.                                                                                                   CATH domains
           Pfam domains (1) --Adhesin_Dr-2jkjF01 F:2-139                                                                                                                 Pfam domains (1)
           Pfam domains (2) --Adhesin_Dr-2jkjF02 F:2-139                                                                                                                 Pfam domains (2)
           Pfam domains (3) --Adhesin_Dr-2jkjF03 F:2-139                                                                                                                 Pfam domains (3)
           Pfam domains (4) --Adhesin_Dr-2jkjF04 F:2-139                                                                                                                 Pfam domains (4)
           Pfam domains (5) --Adhesin_Dr-2jkjF05 F:2-139                                                                                                                 Pfam domains (5)
           Pfam domains (6) --Adhesin_Dr-2jkjF06 F:2-139                                                                                                                 Pfam domains (6)
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee.hhh.....eeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jkj F   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 139
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Dr-family adhesin (11)

Protein domain: DraA/Afimbrial adhesin Afa-III (11)

Escherichia coli [TaxId: 562] (11)

1a	d2jkja_	A:
1b	d2jkjb_	B:
1c	d2jkjc_	C:
1d	d2jkjd_	D:
1e	d2jkje_	E:
1f	d2jkjf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Afimbrial adhesin afa-iii. (12)

Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h. Cell_line: m15. (4)

1a	2jkjA00	A:0-138
1b	2jkjC00	C:0-138
1c	2jkjD00	D:0-138
1d	2jkjF00	F:0-139
1e	2jkjB00	B:0-138
1f	2jkjE00	E:0-138

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Adhesin (36)

Family: Adhesin_Dr (9)

Escherichia coli (9)

1a	Adhesin_Dr-2jkjF01	F:2-139
1b	Adhesin_Dr-2jkjF02	F:2-139
1c	Adhesin_Dr-2jkjF03	F:2-139
1d	Adhesin_Dr-2jkjF04	F:2-139
1e	Adhesin_Dr-2jkjF05	F:2-139
1f	Adhesin_Dr-2jkjF06	F:2-139

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (DRAA_ECOLX | P24093)

cellular component
	GO:0009289		pilus		A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		CLM	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TH8	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2jkj)

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		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	2jkj
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UniProtKB/Swiss-Prot
	DRAA_ECOLX \| P24093	:	1usq 1ut1 2jkl 2jkn 2w5p

1usq	COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL
1ut1	DRAE ADHESIN FROM ESCHERICHIA COLI
2jkl	DRAE ADHESIN IN COMPLEX WITH BROMAMPHENICOL
2jkn	DRAE ADHESIN IN COMPLEX WITH CHLORAMPHENICOL SUCCINATE (TRIGONAL FORM)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 23)

Sites (23, 23)

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (1, 1)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File