Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  DRAE ADHESIN FROM ESCHERICHIA COLI
 
Authors :  K. L. Anderson, J. Billington, D. Pettigrew, E. Cota, P. Roversi, P. Simpson, H. A. Chen, P. Urvil, L. Dumerle, P. Barlow, E. Medof, R. A. G. Smith, B. Nowicki, C. Le Bouguenec, S. M. Lea, S. Matthews
Date :  02 Dec 03  (Deposition) - 31 Aug 04  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D,E  (1x)
Biol. Unit 2:  B,C,F  (1x)
Keywords :  Adhesin, Protein Binding Fimbrial Adhesin, Upec, Daec (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Pettigrew, K. L. Anderson, J. Billington, E. Cota, P. Simpson, P. Urvil, F. Rabuzin, P. Roversi, B. Nowicki, L. Du Merle, C. Le Bouguenec, S. Matthews, S. M. Lea
High Resolution Studies Of The Afa/Dr Adhesin Drae And Its Interaction With Chloramphenicol
J. Biol. Chem. V. 279 46851 2004
PubMed-ID: 15331605  |  Reference-DOI: 10.1074/JBC.M409284200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DR HEMAGGLUTININ STRUCTURAL SUBUNIT
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE-30
    Expression System StrainM15
    Expression System Taxid562
    FragmentMATURE PROTEIN, RESIDUES 21-160
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    Other Details6-HIS-TAGGED
    StrainIH11128
    SynonymDRAA
    VariantO75:K5:H-

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A  DE 
Biological Unit 2 (1x) BC  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 42)

Asymmetric Unit (2, 42)
No.NameCountTypeFull Name
1EDO30Ligand/Ion1,2-ETHANEDIOL
2SO412Ligand/IonSULFATE ION
Biological Unit 1 (2, 26)
No.NameCountTypeFull Name
1EDO20Ligand/Ion1,2-ETHANEDIOL
2SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2SO46Ligand/IonSULFATE ION

(-) Sites  (42, 42)

Asymmetric Unit (42, 42)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:17 , LYS A:18 , ARG A:32 , HOH A:2138 , HOH A:2139BINDING SITE FOR RESIDUE SO4 A1140
02AC2SOFTWARETHR A:8 , GLY A:9 , THR A:10 , HOH A:2146 , HOH A:2147 , HOH A:2148 , GLY E:24 , ASP E:25BINDING SITE FOR RESIDUE SO4 A1148
03AC3SOFTWAREGLU B:17 , LYS B:18 , ARG B:32 , HOH B:2139BINDING SITE FOR RESIDUE SO4 B1139
04AC4SOFTWARETHR B:8 , GLY B:9 , THR B:10 , HOH B:2008 , HOH B:2014 , HOH B:2145 , HOH B:2146 , GLY F:24 , ASP F:25BINDING SITE FOR RESIDUE SO4 B1145
05AC5SOFTWAREGLY B:24 , ASP B:25 , THR C:8 , GLY C:9 , THR C:10 , HOH C:2013 , HOH C:2014 , HOH C:2142 , HOH C:2143BINDING SITE FOR RESIDUE SO4 C1139
06AC6SOFTWAREGLY C:24 , ASP C:25 , HOH C:2144 , HOH C:2145 , HOH C:2146 , THR F:8 , GLY F:9 , THR F:10BINDING SITE FOR RESIDUE SO4 C1140
07AC7SOFTWAREGLU C:17 , LYS C:18 , ARG C:32 , HOH C:2147BINDING SITE FOR RESIDUE SO4 C1141
08AC8SOFTWAREGLY A:24 , ASP A:25 , HOH A:2029 , GLY D:9 , THR D:10 , HOH D:2130 , HOH D:2131BINDING SITE FOR RESIDUE SO4 D1139
09AC9SOFTWAREGLY D:24 , ASP D:25 , HOH D:2028 , HOH D:2132 , HOH D:2133 , GLY E:9 , THR E:10 , HOH E:2012BINDING SITE FOR RESIDUE SO4 D1140
10BC1SOFTWAREGLU D:17 , LYS D:18 , ARG D:32 , EDO D:1142 , HOH D:2134BINDING SITE FOR RESIDUE SO4 D1141
11BC2SOFTWAREGLU E:17 , LYS E:18 , ARG E:32 , HOH E:2137 , HOH E:2138BINDING SITE FOR RESIDUE SO4 E1140
12BC3SOFTWAREGLU F:17 , LYS F:18 , ARG F:32 , HOH F:2122BINDING SITE FOR RESIDUE SO4 F1139
13BC4SOFTWAREVAL A:15 , THR A:16 , PRO A:125 , GLY A:126 , HOH A:2140 , PRO D:4 , SER D:5 , GLY D:6BINDING SITE FOR RESIDUE EDO A1141
14BC5SOFTWARESER A:74 , ASN A:76 , ASP A:79 , PRO A:125 , HOH A:2080 , HOH A:2085 , HOH A:2141BINDING SITE FOR RESIDUE EDO A1142
15BC6SOFTWARELYS A:30 , GLN A:34 , ALA A:39 , PRO A:40 , EDO A:1146 , GLN C:47 , HOH C:2118BINDING SITE FOR RESIDUE EDO A1143
16BC7SOFTWARELEU A:49 , GLY A:50 , ASP A:52 , SER A:107 , HOH A:2062BINDING SITE FOR RESIDUE EDO A1144
17BC8SOFTWAREASN A:76 , ARG A:78 , HOH A:2142 , THR F:62 , ASP F:63 , GLU F:66BINDING SITE FOR RESIDUE EDO A1145
18BC9SOFTWAREALA A:39 , PRO A:40 , EDO A:1143 , HOH A:2143 , TRP C:108 , GLY C:109BINDING SITE FOR RESIDUE EDO A1146
19CC1SOFTWARESER A:5 , GLY A:6 , HOH A:2144 , THR E:14 , VAL E:15 , PRO E:125 , GLY E:126BINDING SITE FOR RESIDUE EDO A1147
20CC2SOFTWARESER B:74 , ASN B:76 , ASP B:79 , PRO B:125 , HOH B:2076 , HOH B:2140BINDING SITE FOR RESIDUE EDO B1140
21CC3SOFTWARELYS B:30 , ALA B:39 , PRO B:40 , EDO B:1143 , GLN D:47 , HOH D:2048BINDING SITE FOR RESIDUE EDO B1141
22CC4SOFTWARELEU B:49 , GLY B:50 , ASP B:52 , SER B:107 , HOH B:2055 , HOH B:2141BINDING SITE FOR RESIDUE EDO B1142
23CC5SOFTWAREALA B:39 , EDO B:1141 , HOH B:2043 , HOH B:2143 , TRP D:108 , GLY D:109BINDING SITE FOR RESIDUE EDO B1143
24CC6SOFTWAREPRO B:4 , SER B:5 , GLY B:6 , HOH B:2009 , VAL F:15 , PRO F:125 , GLY F:126BINDING SITE FOR RESIDUE EDO B1144
25CC7SOFTWAREVAL B:15 , PRO B:125 , GLY B:126 , SER C:5 , GLY C:6 , HOH C:2148BINDING SITE FOR RESIDUE EDO C1142
26CC8SOFTWARELEU C:49 , GLY C:50 , ASP C:52 , SER C:107 , HOH C:2149BINDING SITE FOR RESIDUE EDO C1143
27CC9SOFTWAREGLU D:17 , LYS D:18 , CYS D:19 , SO4 D:1141 , ARG E:54BINDING SITE FOR RESIDUE EDO D1142
28DC1SOFTWARELEU D:49 , GLY D:50 , ASP D:52 , SER D:107BINDING SITE FOR RESIDUE EDO D1143
29DC2SOFTWARETHR C:62 , ASN D:76 , ARG D:78 , EDO D:1147 , HOH D:2135BINDING SITE FOR RESIDUE EDO D1144
30DC3SOFTWAREASN C:76 , ARG C:78 , THR D:62BINDING SITE FOR RESIDUE EDO D1145
31DC4SOFTWAREGLY D:68 , PHE D:70 , ASN D:84 , ILE D:85 , THR D:95 , HOH D:2081BINDING SITE FOR RESIDUE EDO D1146
32DC5SOFTWARETHR C:62 , ASN D:76 , ARG D:78 , EDO D:1144 , HOH D:2136BINDING SITE FOR RESIDUE EDO D1147
33DC6SOFTWAREEDO E:1146 , LYS F:102 , HOH F:2088 , HOH F:2101BINDING SITE FOR RESIDUE EDO E 189
34DC7SOFTWARESER E:74 , ASN E:76 , ASP E:79 , PRO E:125 , HOH E:2139BINDING SITE FOR RESIDUE EDO E1141
35DC8SOFTWAREGLN E:34 , THR E:36 , ALA E:39 , EDO E:1144 , HOH E:2040 , HOH E:2045 , HOH F:2104BINDING SITE FOR RESIDUE EDO E1142
36DC9SOFTWAREGLY E:50 , CYS E:51 , ASP E:52BINDING SITE FOR RESIDUE EDO E1143
37EC1SOFTWAREALA E:39 , EDO E:1142 , EDO E:1146 , TRP F:108 , GLY F:109BINDING SITE FOR RESIDUE EDO E1144
38EC2SOFTWARETHR E:10 , THR E:11 , LYS E:12 , VAL E:28 , HOH E:2140 , HOH E:2141 , HOH E:2142BINDING SITE FOR RESIDUE EDO E1145
39EC3SOFTWAREALA E:38 , EDO E:189 , EDO E:1144 , HOH E:2056 , ASP F:89 , TRP F:108BINDING SITE FOR RESIDUE EDO E1146
40EC4SOFTWARESER F:74 , ASN F:76 , ASP F:79 , PRO F:124 , PRO F:125 , HOH F:2123BINDING SITE FOR RESIDUE EDO F1140
41EC5SOFTWARETRP E:108 , GLY E:109 , HOH F:2042 , HOH F:2126BINDING SITE FOR RESIDUE EDO F1141
42EC6SOFTWARELEU F:49 , GLY F:50 , ASP F:52 , SER F:107 , HOH F:2127BINDING SITE FOR RESIDUE EDO F1142

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:19 -D:51
2A:51 -E:19
3B:19 -C:51
4B:51 -F:19
5C:19 -F:51
6D:19 -E:51

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UT1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 6)

Asymmetric Unit (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_DRAA_ECOLX_001 *R43YDRAA_ECOLX  ---  ---A/B/C/D/E/FR22Y
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_DRAA_ECOLX_001 *R43YDRAA_ECOLX  ---  ---A/D/ER22Y
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_DRAA_ECOLX_001 *R43YDRAA_ECOLX  ---  ---B/C/FR22Y
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UT1)

(-) Exons   (0, 0)

(no "Exon" information available for 1UT1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:140
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 160
               SCOP domains d1ut1a_ A: DraA/Afimbrial adhesin Afa-III                                                                                                    SCOP domains
               CATH domains 1ut1A00 A:0-139 Afimbrial adhesin afa-iii.                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee...eeee.....eee.hhh....eeeeeeeeee...................eeeeee.....eeeeeeee.....................eeeeeeee.........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 A   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 139
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Chain B from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1ut1b_ B: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1ut1B00 B:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeeeee...................eeeeee.....eeeeeeee.....................eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 B   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129         

Chain C from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1ut1c_ C: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1ut1C00 C:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee....ee..eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 C   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129         

Chain D from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1ut1d_ D: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1ut1D00 D:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeeeee...................eeeeee.....eeeeeeee.....................eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 D   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129         

Chain E from PDB  Type:PROTEIN  Length:140
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:140
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 160
               SCOP domains d1ut1e_ E: DraA/Afimbrial adhesin Afa-III                                                                                                    SCOP domains
               CATH domains 1ut1E00 E:0-139 Afimbrial adhesin afa-iii.                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee...eeee.....eee.hhh...................eeeeee....ee..eeeeee..................eeee..eeee.......................eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 E   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 139
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Chain F from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1ut1f_ F: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1ut1F00 F:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
           Pfam domains (1) --Adhesin_Dr-1ut1F01 F:2-138                                                                                                                Pfam domains (1)
           Pfam domains (2) --Adhesin_Dr-1ut1F02 F:2-138                                                                                                                Pfam domains (2)
           Pfam domains (3) --Adhesin_Dr-1ut1F03 F:2-138                                                                                                                Pfam domains (3)
           Pfam domains (4) --Adhesin_Dr-1ut1F04 F:2-138                                                                                                                Pfam domains (4)
           Pfam domains (5) --Adhesin_Dr-1ut1F05 F:2-138                                                                                                                Pfam domains (5)
           Pfam domains (6) --Adhesin_Dr-1ut1F06 F:2-138                                                                                                                Pfam domains (6)
         Sec.struct. author .eeeeeeeeeeeeeeee...eeee.....eee.hhh...................eeeeee....ee..eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ut1 F   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Adhesin (36)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DRAA_ECOLX | P24093)
cellular component
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ut1)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1ut1
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DRAA_ECOLX | P24093
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  DRAA_ECOLX | P24093
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DRAA_ECOLX | P240931usq 2jkj 2jkl 2jkn 2w5p

(-) Related Entries Specified in the PDB File

1usq COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL
1usz SEMET AFAE-3 ADHESIN FROM ESCHERICHIA COLI
1ut2 AFAE-3 ADHESIN FROM ESCHERICHIA COLI