1USQ - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   COMPLEX OF E. COLI DRAE ADHESIN WITH CHLORAMPHENICOL

Authors :   K. L. Anderson, J. Billington, D. Pettigrew, E. Cota, P. Roversi, P. Simpson, H. A. Chen, P. Urvil, L. Dumerle, P. Barlow, E. Medof, R. A. G. Smith, B. Nowicki, C. Le Bouguenec, S. M. Lea, S. Matthews

Date :   27 Nov 03 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (3x)
Biol. Unit 2: B  (3x)
Biol. Unit 3: C  (3x)
Biol. Unit 4: D  (3x)
Biol. Unit 5: E  (3x)
Biol. Unit 6: F  (3x)

Keywords :   Adhesin, Drae, Fimbrial Adhesin, Chloramphenicol, Upec, Daec (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Pettigrew, K. L. Anderson, J. Billington, E. Cota, P. Simpson, P. Urvil, F. Rabuzin, P. Roversi, B. Nowicki, L. Du Merle, C. Le Bouguenec, S. Matthews, S. M. Lea
High Resolution Studies Of The Afa/Dr Adhesin Drae And Its Interaction With Chloramphenicol
J. Biol. Chem. V. 279 46851 2004
PubMed-ID: 15331605 | Reference-DOI: 10.1074/JBC.M409284200
(for further references see the PDB file header)

Molecule 1 - DR HEMAGGLUTININ STRUCTURAL SUBUNIT
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE-30
	Expression System Strain	:	M15
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	COMPLEX WITH CHLORAMPHENICOL
	Other Details - Source	:	6-HIS-TAGGED
	Strain	:	IH11128
	Synonym	:	ADHESIN, DRAE
	Variant	:	O75:K5:H-

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (3x)	:	A
Biological Unit 2 (3x)	:		B
Biological Unit 3 (3x)	:			C
Biological Unit 4 (3x)	:				D
Biological Unit 5 (3x)	:					E
Biological Unit 6 (3x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 31)

No.	Name	Count	Type	Full Name
1	CLM	6	Ligand/Ion	CHLORAMPHENICOL
2	EDO	11	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 18)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 5 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 6 (3, 15)

No.	Name	Count	Type	Full Name
1	CLM	3	Ligand/Ion	CHLORAMPHENICOL
2	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2006 , HOH A:2011 , HOH A:2012 , HOH A:2106	BINDING SITE FOR RESIDUE SO4 A1139
02	AC2	SOFTWARE	ASP A:89 , ASN A:90 , HOH A:2107 , ASP D:52 , GLY D:106 , SER D:107 , HOH D:2056	BINDING SITE FOR RESIDUE SO4 A1140
03	AC3	SOFTWARE	GLU A:17 , LYS A:18 , ARG A:32 , HOH A:2110	BINDING SITE FOR RESIDUE SO4 A1144
04	AC4	SOFTWARE	THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2009 , HOH B:2010 , HOH B:2109 , HOH B:2110	BINDING SITE FOR RESIDUE SO4 B1139
05	AC5	SOFTWARE	ASP B:89 , ASN B:90 , HOH B:2111 , ASP F:52 , GLY F:106 , SER F:107 , HOH F:2054	BINDING SITE FOR RESIDUE SO4 B1140
06	AC6	SOFTWARE	THR C:8 , GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2010 , HOH C:2110 , HOH C:2111	BINDING SITE FOR RESIDUE SO4 C1139
07	AC7	SOFTWARE	ASP C:89 , ASN C:90 , HOH C:2112 , ASP E:52 , GLY E:106 , SER E:107 , HOH E:2054	BINDING SITE FOR RESIDUE SO4 C1140
08	AC8	SOFTWARE	THR D:8 , GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2012 , HOH D:2014 , HOH D:2027 , HOH D:2126 , HOH D:2127	BINDING SITE FOR RESIDUE SO4 D1139
09	AC9	SOFTWARE	ASP A:52 , GLY A:106 , SER A:107 , ASP D:89 , ASN D:90 , HOH D:2128	BINDING SITE FOR RESIDUE SO4 D1140
10	BC1	SOFTWARE	GLU D:17 , LYS D:18 , ARG D:32 , HOH D:2130	BINDING SITE FOR RESIDUE SO4 D1143
11	BC2	SOFTWARE	THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2008 , HOH E:2010 , HOH E:2025 , HOH E:2115	BINDING SITE FOR RESIDUE SO4 E1139
12	BC3	SOFTWARE	ASP C:52 , GLY C:106 , SER C:107 , HOH C:2047 , ASP E:89 , ASN E:90 , HOH E:2116	BINDING SITE FOR RESIDUE SO4 E1140
13	BC4	SOFTWARE	THR F:8 , GLY F:9 , THR F:10 , GLY F:24 , ASP F:25 , HOH F:2120 , HOH F:2121	BINDING SITE FOR RESIDUE SO4 F1140
14	BC5	SOFTWARE	ASP B:52 , GLY B:106 , SER B:107 , HOH B:2050 , ASP F:89 , ASN F:90 , HOH F:2122	BINDING SITE FOR RESIDUE SO4 F1141
15	BC6	SOFTWARE	SER A:5 , GLY A:6 , VAL A:15 , PRO A:125 , GLY A:126	BINDING SITE FOR RESIDUE EDO A1141
16	BC7	SOFTWARE	SER A:74 , ASN A:76 , ASP A:79 , PRO A:124 , PRO A:125 , HOH A:2108	BINDING SITE FOR RESIDUE EDO A1142
17	BC8	SOFTWARE	PRO A:40 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26	BINDING SITE FOR RESIDUE CLM A1143
18	BC9	SOFTWARE	SER B:5 , GLY B:6 , VAL B:15 , PRO B:125 , GLY B:126	BINDING SITE FOR RESIDUE EDO B1141
19	CC1	SOFTWARE	SER B:74 , ASN B:76 , ASP B:79 , PRO B:124 , PRO B:125 , HOH B:2112	BINDING SITE FOR RESIDUE EDO B1142
20	CC2	SOFTWARE	PRO B:40 , GLY B:42 , PRO B:43 , ILE B:111 , GLY B:113 , ILE B:114 , TYR B:115 , LEU F:26	BINDING SITE FOR RESIDUE CLM B1143
21	CC3	SOFTWARE	SER C:5 , GLY C:6 , VAL C:15 , THR C:16 , PRO C:125 , GLY C:126	BINDING SITE FOR RESIDUE EDO C1141
22	CC4	SOFTWARE	SER C:74 , ASN C:76 , ASP C:79 , PRO C:124 , PRO C:125 , HOH C:2113	BINDING SITE FOR RESIDUE EDO C1142
23	CC5	SOFTWARE	PRO C:40 , GLY C:42 , PRO C:43 , ILE C:111 , ILE C:114 , TYR C:115 , LEU E:26	BINDING SITE FOR RESIDUE CLM C1143
24	CC6	SOFTWARE	PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , GLY D:126	BINDING SITE FOR RESIDUE EDO D1141
25	CC7	SOFTWARE	ARG A:22 , LEU A:26 , PRO D:40 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115	BINDING SITE FOR RESIDUE CLM D1142
26	CC8	SOFTWARE	SER E:5 , GLY E:6 , VAL E:15 , PRO E:125 , GLY E:126	BINDING SITE FOR RESIDUE EDO E1141
27	CC9	SOFTWARE	SER E:74 , ASN E:76 , ASP E:79 , PRO E:124 , PRO E:125 , HOH E:2117	BINDING SITE FOR RESIDUE EDO E1142
28	DC1	SOFTWARE	ARG C:22 , LEU C:26 , PRO E:40 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114 , TYR E:115	BINDING SITE FOR RESIDUE CLM E1143
29	DC2	SOFTWARE	PRO F:4 , SER F:5 , GLY F:6 , VAL F:15 , THR F:16 , PRO F:125 , GLY F:126	BINDING SITE FOR RESIDUE EDO F1142
30	DC3	SOFTWARE	SER F:74 , ASN F:76 , ASP F:79 , PRO F:124 , PRO F:125 , HOH F:2123	BINDING SITE FOR RESIDUE EDO F1143
31	DC4	SOFTWARE	ARG B:22 , LEU B:26 , PRO F:40 , GLY F:42 , PRO F:43 , ILE F:111 , GLY F:113 , ILE F:114 , TYR F:115	BINDING SITE FOR RESIDUE CLM F1144

Asymmetric Unit

No.	Residues
1	A:19	-	A:51
2	B:19	-	B:51
3	C:19	-	C:51
4	D:19	-	D:51
5	E:19	-	E:51
6	F:19	-	F:51

(no "Cis Peptide Bond" information available for 1USQ)

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A/B/C/D/E/F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	A	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	B	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	C	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	D	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	E	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_DRAA_ECOLX_001 *	R	43	Y	DRAA_ECOLX	---	---	F	R	22	Y
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1USQ)

(no "Exon" information available for 1USQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1usqa_ A: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1usqA00 A:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq A   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain B from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1usqb_ B: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1usqB00 B:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq B   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain C from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1usqc_ C: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1usqC00 C:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh...................eeeeee........eeeeee..................eeee..eeee.......................eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq C   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain D from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1usqd_ D: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1usqD00 D:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq D   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain E from PDB  Type:PROTEIN  Length:139
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:139
                                    30        40        50        60        70        80        90       100       110       120       130       140       150         
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 159
               SCOP domains d1usqe_ E: DraA/Afimbrial adhesin Afa-III                                                                                                   SCOP domains
               CATH domains 1usqE00 E:0-138 Afimbrial adhesin afa-iii.                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq E   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWA 138
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain F from PDB  Type:PROTEIN  Length:140
 aligned with DRAA_ECOLX | P24093 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:140
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160
           DRAA_ECOLX    21 AGFTPSGTTGTTKLTVTEECQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 160
               SCOP domains d1usqf_ F: DraA/Afimbrial adhesin Afa-III                                                                                                    SCOP domains
               CATH domains 1usqF00 F:0-139 Afimbrial adhesin afa-iii.                                                                                                   CATH domains
           Pfam domains (1) --Adhesin_Dr-1usqF01 F:2-139                                                                                                                 Pfam domains (1)
           Pfam domains (2) --Adhesin_Dr-1usqF02 F:2-139                                                                                                                 Pfam domains (2)
           Pfam domains (3) --Adhesin_Dr-1usqF03 F:2-139                                                                                                                 Pfam domains (3)
           Pfam domains (4) --Adhesin_Dr-1usqF04 F:2-139                                                                                                                 Pfam domains (4)
           Pfam domains (5) --Adhesin_Dr-1usqF05 F:2-139                                                                                                                 Pfam domains (5)
           Pfam domains (6) --Adhesin_Dr-1usqF06 F:2-139                                                                                                                 Pfam domains (6)
         Sec.struct. author .eeeeeeeeeeeeeeee............eee.hhh....eeeeeeee.......eeeeee....ee..eeeeee.....eeeeeeee.....eeee..eeee......eeeeeeee.........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------Y--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1usq F   0 GSFTPSGTTGTTKLTVTEKCQVRVGDLTVAKTRGQLTDAAPIGPVTVQALGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTLTGGYWAK 139
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Dr-family adhesin (11)

Protein domain: DraA/Afimbrial adhesin Afa-III (11)

Escherichia coli [TaxId: 562] (11)

1a	d1usqa_	A:
1b	d1usqb_	B:
1c	d1usqc_	C:
1d	d1usqd_	D:
1e	d1usqe_	E:
1f	d1usqf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Afimbrial adhesin afa-iii. (12)

Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h-. (2)

1a	1usqA00	A:0-138
1b	1usqE00	E:0-138
1c	1usqF00	F:0-139
1d	1usqB00	B:0-138
1e	1usqC00	C:0-138
1f	1usqD00	D:0-138

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Adhesin (36)

Family: Adhesin_Dr (9)

Escherichia coli (9)

1a	Adhesin_Dr-1usqF01	F:2-139
1b	Adhesin_Dr-1usqF02	F:2-139
1c	Adhesin_Dr-1usqF03	F:2-139
1d	Adhesin_Dr-1usqF04	F:2-139
1e	Adhesin_Dr-1usqF05	F:2-139
1f	Adhesin_Dr-1usqF06	F:2-139

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (DRAA_ECOLX | P24093)

cellular component
	GO:0009289		pilus		A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CLM	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1usq)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1usq
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	DRAA_ECOLX \| P24093
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	DRAA_ECOLX \| P24093
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	DRAA_ECOLX \| P24093	:	1ut1 2jkj 2jkl 2jkn 2w5p

1ut1	DRAE ADHESIN FROM ESCHERICHIA COLI

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 31)

Sites (31, 31)

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (1, 1)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File