PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2F0C
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (80 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE RECEPTOR BINDING PROTEIN (ORF49, BBP) FROM LACTOPHAGE TP901-1
Authors
:
C. Cambillau, S. Spinelli
Date
:
13 Nov 05 (Deposition) - 28 Mar 06 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Beta-Barrel, Beta Prism, 3 Helix Parallel Bundle, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Spinelli, V. Campanacci, S. Blangy, S. Moineau, M. Tegoni, C. Cambillau
Modular Structure Of The Receptor Binding Proteins Of Lactococcus Lactis Phages. The Rbp Structure Of The Temperate Phage Tp901-1.
J. Biol. Chem. V. 281 14256 2006
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:118 , ASP A:135 , ARG B:155 , HOH B:940 , HOH B:1044 , HOH B:1045
BINDING SITE FOR RESIDUE GOL B 801
2
AC2
SOFTWARE
HIS B:133 , ASP B:135 , PHE B:145 , HOH B:895 , HOH B:938 , VAL C:126 , ARG C:155
BINDING SITE FOR RESIDUE GOL B 802
3
AC3
SOFTWARE
THR A:39 , VAL A:126 , ARG A:155 , HOH A:273 , HIS C:133 , ASP C:135 , PHE C:145 , HOH C:888 , HOH C:944 , HOH C:989 , HOH C:1020
BINDING SITE FOR RESIDUE GOL C 803
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2f0ca2 (A:17-62)
1b: SCOP_d2f0cb2 (B:16-62)
1c: SCOP_d2f0cc2 (C:17-62)
2a: SCOP_d2f0ca1 (A:63-163)
2b: SCOP_d2f0cb1 (B:63-163)
2c: SCOP_d2f0cc1 (C:63-163)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Triple-stranded beta-helix
(23)
Superfamily
:
Phage fibre proteins
(23)
Family
:
Lactophage receptor-binding protein domain
(3)
Protein domain
:
Baseplate protein (bpp), N-terminal domain
(1)
Lactococcus phage tp901-1 [TaxId: 35345]
(1)
1a
d2f0ca2
A:17-62
1b
d2f0cb2
B:16-62
1c
d2f0cc2
C:17-62
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Lactophage receptor-binding protein head domain
(10)
Protein domain
:
Baseplate protein (bpp), C-terminal domain
(1)
Lactococcus phage tp901-1 [TaxId: 35345]
(1)
2a
d2f0ca1
A:63-163
2b
d2f0cb1
B:63-163
2c
d2f0cc1
C:63-163
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2F0C
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help