2BG6 - JenaLib

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:116 , HIS A:118 , HIS A:196 , HOH A:2134	BINDING SITE FOR RESIDUE ZN A1301
02	AC2	SOFTWARE	SER A:225 , THR A:226 , SER A:227 , GLY A:264 , GLU A:265 , HOH A:2041	BINDING SITE FOR RESIDUE SO4 A1302
03	AC3	SOFTWARE	LYS A:93 , GLU A:97 , ARG A:131 , ARG A:254 , ILE A:256 , LYS A:280 , HOH A:2029 , HOH A:2033 , HOH A:2136	BINDING SITE FOR RESIDUE SO4 A1303
04	AC4	SOFTWARE	THR A:176 , HOH A:2137 , HOH A:2138 , LYS B:102	BINDING SITE FOR RESIDUE SO4 A1304
05	AC5	SOFTWARE	HIS B:196 , CSD B:221 , LYS B:224 , ASN B:233 , HOH B:2159 , HOH B:2160	BINDING SITE FOR RESIDUE AZI B1299
06	AC6	SOFTWARE	ASN B:215 , ASN B:255	BINDING SITE FOR RESIDUE AZI B1300
07	AC7	SOFTWARE	HIS B:116 , HIS B:118 , HIS B:196 , CSD B:221 , HOH B:2162	BINDING SITE FOR RESIDUE ZN B1301
08	AC8	SOFTWARE	SER B:225 , THR B:226 , SER B:227 , GLY B:264 , GLU B:265 , HOH B:2145 , HOH B:2163	BINDING SITE FOR RESIDUE SO4 B1302
09	AC9	SOFTWARE	LYS B:181 , LYS B:186 , ARG B:252 , HOH B:2164	BINDING SITE FOR RESIDUE SO4 B1303
10	BC1	SOFTWARE	LYS A:148 , GLU B:100 , ARG B:107 , ARG B:131 , HOH B:2054	BINDING SITE FOR RESIDUE SO4 B1304
11	BC2	SOFTWARE	LYS A:147 , ARG B:107	BINDING SITE FOR RESIDUE SO4 B1305
12	BC3	SOFTWARE	LYS B:129 , GLU B:168 , GLU B:169	BINDING SITE FOR RESIDUE SO4 B1306
13	BC4	SOFTWARE	ASP A:88 , ASP A:89 , LYS A:90	BINDING SITE FOR RESIDUE GOL A1293
14	BC5	SOFTWARE	LYS A:186 , GLN A:210 , HOH A:2130	BINDING SITE FOR RESIDUE GOL A1294
15	BC6	SOFTWARE	ALA A:235 , ALA A:237 , TYR A:238 , GOL A:1318 , LYS B:291	BINDING SITE FOR RESIDUE GOL A1295
16	BC7	SOFTWARE	SER A:227 , ALA A:228 , LYS A:229 , ASP A:230	BINDING SITE FOR RESIDUE GOL A1296
17	BC8	SOFTWARE	HIS A:196 , CSD A:221 , LYS A:224 , ASN A:233 , HOH B:2073	BINDING SITE FOR RESIDUE GOL A1297
18	BC9	SOFTWARE	LEU A:48 , ASN A:49 , GLU A:130 , ILE A:216 , ASN A:257 , ALA A:258 , HOH A:2133	BINDING SITE FOR RESIDUE GOL A1298
19	CC1	SOFTWARE	HIS A:118 , ALA A:119 , ASN A:149 , TYR A:167	BINDING SITE FOR RESIDUE GOL A1299
20	CC2	SOFTWARE	ASN A:179 , LEU A:180 , LYS A:181 , LYS A:186 , LYS B:32 , VAL B:34	BINDING SITE FOR RESIDUE GOL A1300
21	CC3	SOFTWARE	GLN B:47 , LYS B:50 , LYS B:103 , HOH B:2023	BINDING SITE FOR RESIDUE GOL A1313
22	CC4	SOFTWARE	TYR A:238 , GOL A:1295	BINDING SITE FOR RESIDUE GOL A1318
23	CC5	SOFTWARE	ALA B:228 , LYS B:229 , ASP B:230 , HOH B:2154	BINDING SITE FOR RESIDUE GOL B1293
24	CC6	SOFTWARE	ALA B:117 , HIS B:118 , LEU B:145 , ASN B:149 , THR B:197 , ASP B:199 , HOH B:2156	BINDING SITE FOR RESIDUE GOL B1294
25	CC7	SOFTWARE	ASP B:88 , ASP B:89 , LYS B:90 , HOH B:2157	BINDING SITE FOR RESIDUE GOL B1295
26	CC8	SOFTWARE	ASN B:49 , LYS B:50 , HOH B:2024	BINDING SITE FOR RESIDUE GOL B1296
27	CC9	SOFTWARE	GLU B:100 , GLN B:105 , ARG B:107 , HOH B:2055	BINDING SITE FOR RESIDUE GOL B1297
28	DC1	SOFTWARE	VAL B:54 , ASN B:70 , GLY B:264 , GLU B:265 , HOH B:2158	BINDING SITE FOR RESIDUE GOL B1298

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:216
 aligned with BLA2_BACCE | P04190 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:221
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 
           BLA2_BACCE    37 TVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 257
               SCOP domains d2bg6a_ A: automated match     es                                                                                                                                                                                             SCOP domains
               CATH domains 2bg6A00 A:33-291 Metallo-b     eta-lactamase, chain A                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeeeee..eeeeeee.-----..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eee.hhhhhhhhhh............eeeeee..eeeeee...........eee.....eeeee.................hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------BETA_LACTAMASE_B_1  --------------------------------------------------------BETA_LACTAMAS-------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bg6 A  33 TVIKNETGTISISQLNKNVWVHTELG-----AVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADCIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGcLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 291
                                    42  ||    53     |   - |      74        84        94     ||105 ||    116       126    || 137       147  ||   173       183       193       203 || || 219 |     229       239       249       259     ||280       290 
                                       45|          59    66                               100|  107|                   131|              150|                                   205| ||     |                                         265|              
                                        47                                                  102   109                    133               167                                    209 ||     |                                          277              
                                                                                                                                                                                    211|     |                                                           
                                                                                                                                                                                     215     |                                                           
                                                                                                                                                                                           221-CSD

Chain B from PDB  Type:PROTEIN  Length:218
 aligned with BLA2_BACCE | P04190 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:222
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255  
           BLA2_BACCE    36 KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 257
               SCOP domains d2bg6b_ B: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains 2bg6B00 B:32-291 Metallo-bet    a-lactamase, chain A                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.....eeeeeee..eeeeeeee.----.eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eee.hhhhhhhhhhh...........eeeeee..eeeeee...........eee.....eeeee.................hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------BETA_LACTAMASE_B_1  --------------------------------------------------------BETA_LACTAMAS-------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bg6 B  32 KTVIKNETGTISISQLNKNVWVHTELGS----AVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADCIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGcLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 291
                                    41   ||   52       | -  |     73        83        93      |104  ||   115       125     ||136       146   ||  172       182       192       202  || ||218  |    228       238       248       258      |279       289  
                                        45|           60   66                               100|  107|                   131|              150|                                   205| ||     |                                         265|              
                                         47                                                  102   109                    133               167                                    209 ||     |                                          277              
                                                                                                                                                                                     211|     |                                                           
                                                                                                                                                                                      215     |                                                           
                                                                                                                                                                                            221-CSD

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A,B (BLA2_BACCE | P04190)

molecular function
	GO:0008800	beta-lactamase activity	Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0017001	antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	2bg6
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	BLA2_BACCE \| P04190
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	3.5.2.6
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1bc2	ZN-DEPENDENT METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
1bmc	STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
1bvt	METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9
1dxk	METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9 C168S MUTANT
1mqo	METALLO-BETA-LACTAMASE BCII CD SUBSTITUTED FROM BACILLUSCEREUS AT 1.35 ANGSTROMS RESOLUTION
2bc2	METALLO BETA-LACTAMASE II FROM BACILLUS CEREUS 569/H/9 AT PH 6.0, TRIGONAL CRYSTAL FORM
2bfk	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH7 USING 20MM ZNSO4 IN BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT
2bfl	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH5 USING 20MM ZNSO4 IN BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT.
2bfz	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20MM ZNSO4 IN BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
2bg2	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20MM ZNSO4 IN THE BUFFER. 1MM DTT AND 1MM TCEP-HCL WERE USED AS REDUCING AGENTS. CYS221 IS REDUCED.
2bg7	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
2bg8	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT AND 1MM TCEP-HCL WERE USED AS REDUCING AGENTS.
2bga	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH7 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
3bc2	METALLO BETA-LACTAMASE II FROM BACILLUS CEREUS 569/H/9 AT PH 6.0, MONOCLINIC CRYSTAL FORM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 30)

Sites (28, 28)