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(-) Description

Title :  CRYSTAL STRUCTURE OF BCII METALLO-BETA-LACTAMASE IN COMPLEX WITH ML302F
 
Authors :  J. Brem, S. S. Van Berkel, M. A. Mcdonough, C. J. Schofield
Date :  09 Jul 14  (Deposition) - 26 Nov 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Antimicrobial Resistance, Metallo Beta Lactamase, Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Brem, S. S. Van Berkel, W. Aik, A. M. Rydzik, M. B. Avison, I. Pettinati, K. D. Umland, A. Kawamura, J. Spencer, T. D. Claridge, M. A. Mcdonough, C. J. Schofield
Rhodanine Hydrolysis Leads To Potent Thioenolate Mediated Metallo-Beta-Lactamase Inhibition.
Nat. Chem. V. 6 1084 2014
PubMed-ID: 25411887  |  Reference-DOI: 10.1038/NCHEM.2110

(-) Compounds

Molecule 1 - BETA-LACTAMASE 2
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 31-257
    Gene: BLM
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396
    Synonym: BETA-LACTAMASE II,CEPHALOSPORINASE,PENICILLINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2S3C1Ligand/Ion(2Z)-2-SULFANYL-3-(2,3,6-TRICHLOROPHENYL)PROP-2-ENOICACID
3SO41Ligand/IonSULFATE ION
4ZN2Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:120 , CYS A:198 , HIS A:240 , S3C A:303binding site for residue ZN A 301
2AC2SOFTWAREHIS A:116 , HIS A:118 , HIS A:179 , S3C A:303binding site for residue ZN A 302
3AC3SOFTWARETRP A:89 , HIS A:118 , ASP A:120 , HIS A:179 , CYS A:198 , LYS A:201 , ASN A:210 , ASP A:213 , HIS A:240 , ZN A:301 , ZN A:302 , HOH A:515 , HOH A:534 , HOH A:656binding site for residue S3C A 303
4AC4SOFTWARELYS A:103 , LYS A:169 , GLN A:190 , HOH A:433binding site for residue SO4 A 304
5AC5SOFTWAREGLU A:130 , ARG A:131 , HOH A:414 , HOH A:426binding site for residue GOL A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TYT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TYT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TYT)

(-) Exons   (0, 0)

(no "Exon" information available for 4TYT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeeeeee..eeeeeeee..eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh.eee.hhhhhhhhhhh...........eeeeee..eeeeee...........eee.....eeeeehhh.................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyt A  35 EKTVIKNTGTISISQLNKNVWVHTELGSAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 257
                                  ||45        55       |69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249        
                                 41|                  63|                                                                                                                                                                                             
                                  43                   68
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYT)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4tyt
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  BLA2_BACCE | P04190
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLA2_BACCE | P04190: 1bc2 1bmc 1bvt 1dxk 1mqo 2bc2 2bfk 2bfl 2bfz 2bg2 2bg6 2bg7 2bg8 2bga 2m5c 2m5d 2nxa 2nyp 2nze 2nzf 2uyx 3bc2 3fcz 3i0v 3i11 3i13 3i14 3i15 3knr 3kns 4c09 4c1c 4c1h 4nq4 4nq5 4nq6 4nq7 5fqa 5fqb 5jmx 5w8w

(-) Related Entries Specified in the PDB File

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