2BFK - JenaLib

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:75	BINDING SITE FOR RESIDUE AZI A1292
02	AC2	SOFTWARE	HIS A:116 , HIS A:118 , HIS A:196 , ZN A:1301 , HOH A:2258 , HOH A:2259	BINDING SITE FOR RESIDUE ZN A1300
03	AC3	SOFTWARE	ASP A:120 , CYS A:221 , HIS A:263 , GOL A:1295 , ZN A:1300 , HOH A:2258	BINDING SITE FOR RESIDUE ZN A1301
04	AC4	SOFTWARE	SER A:225 , THR A:226 , SER A:227 , GLY A:264 , GLU A:265 , HOH A:2260 , HOH A:2261 , HOH A:2263	BINDING SITE FOR RESIDUE SO4 A1302
05	AC5	SOFTWARE	HIS B:196 , LYS B:224 , GLY B:232 , ASN B:233 , GOL B:1297 , ZN B:1300 , HOH B:2113 , HOH B:2177 , HOH B:2233	BINDING SITE FOR RESIDUE AZI B1292
06	AC6	SOFTWARE	HIS B:116 , HIS B:118 , HIS B:196 , ZN B:1300 , HOH B:2113 , HOH B:2243	BINDING SITE FOR RESIDUE ZN B1299
07	AC7	SOFTWARE	ASP B:120 , CYS B:221 , HIS B:263 , AZI B:1292 , ZN B:1299 , HOH B:2177 , HOH B:2243	BINDING SITE FOR RESIDUE ZN B1300
08	AC8	SOFTWARE	VAL B:177 , LYS B:181 , LYS B:186 , ARG B:252	BINDING SITE FOR RESIDUE SO4 B1301
09	AC9	SOFTWARE	SER B:225 , THR B:226 , SER B:227 , GLY B:264 , GLU B:265 , HOH B:2246	BINDING SITE FOR RESIDUE SO4 B1302
10	BC1	SOFTWARE	THR A:33 , LYS A:103	BINDING SITE FOR RESIDUE GOL A1293
11	BC2	SOFTWARE	LYS A:148 , GLU B:100 , ARG B:107 , ARG B:131 , HOH B:2091	BINDING SITE FOR RESIDUE GOL A1294
12	BC3	SOFTWARE	HIS A:196 , CYS A:221 , LYS A:224 , GLY A:232 , ASN A:233 , HIS A:263 , ZN A:1301 , HOH A:2183 , HOH A:2184 , HOH A:2259	BINDING SITE FOR RESIDUE GOL A1295
13	BC4	SOFTWARE	ALA A:117 , HIS A:118 , ALA A:119 , ASN A:149 , TYR A:167	BINDING SITE FOR RESIDUE GOL A1296
14	BC5	SOFTWARE	ASP A:88 , ASP A:89 , LYS A:90 , HOH A:2062	BINDING SITE FOR RESIDUE GOL A1297
15	BC6	SOFTWARE	ASN A:215 , HOH A:2255	BINDING SITE FOR RESIDUE GOL A1298
16	BC7	SOFTWARE	ASN A:184 , LYS A:186 , GLN A:210 , HOH A:2257	BINDING SITE FOR RESIDUE GOL A1299
17	BC8	SOFTWARE	GLN B:47 , LYS B:50 , LYS B:103 , HOH B:2039	BINDING SITE FOR RESIDUE GOL A1303
18	BC9	SOFTWARE	GOL A:1305 , GLU B:100 , GLN B:105 , ARG B:107	BINDING SITE FOR RESIDUE GOL A1304
19	CC1	SOFTWARE	GOL A:1304 , ARG B:107	BINDING SITE FOR RESIDUE GOL A1305
20	CC2	SOFTWARE	ASN B:215 , ARG B:254 , ASN B:255 , HOH B:2234	BINDING SITE FOR RESIDUE GOL B1293
21	CC3	SOFTWARE	HIS B:118 , ALA B:119 , TYR B:167 , HOH B:2238	BINDING SITE FOR RESIDUE GOL B1294
22	CC4	SOFTWARE	ASP B:88 , ASP B:89 , LYS B:90 , HOH B:2117 , HOH B:2239	BINDING SITE FOR RESIDUE GOL B1295
23	CC5	SOFTWARE	THR B:56 , ASN B:70 , GLY B:264 , GLU B:265 , HOH B:2022 , HOH B:2217 , HOH B:2241	BINDING SITE FOR RESIDUE GOL B1296
24	CC6	SOFTWARE	LYS B:224 , ASP B:230 , LEU B:231 , GLY B:232 , AZI B:1292 , HOH B:2233	BINDING SITE FOR RESIDUE GOL B1297
25	CC7	SOFTWARE	SER B:77 , THR B:176 , GLY B:183	BINDING SITE FOR RESIDUE GOL B1298

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:220
 aligned with BLA2_BACCE | P04190 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:221
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256 
           BLA2_BACCE    37 TVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 257
               SCOP domains d2bfka_ A: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains 2bfkA00 A:33-291 Metallo-beta -lactamase, chain A                                                                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeeee....eeeeeeeee..-.eeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eee.hhhhhhhhhhh...........eeeeee..eeeeee...........eee.....eeeeehhh..............hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------BETA_LACTAMASE_B_1  --------------------------------------------------------BETA_LACTAMAS-------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bfk A  33 TVIKNETGTISISQLNKNVWVHTELGSFN-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADCIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 291
                                    42  ||    53        |-||      74        84        94     ||105 ||    116       126    || 137       147  ||   173       183       193       203 || || 219       229       239       249       259     ||280       290 
                                       45|             62 ||                               100|  107|                   131|              150|                                   205| ||                                               265|              
                                        47               64|                                102   109                    133               167                                    209 ||                                                277              
                                                          66                                                                                                                        211|                                                                 
                                                                                                                                                                                     215

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with BLA2_BACCE | P04190 from UniProtKB/Swiss-Prot  Length:257

    Alignment length:222
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255  
           BLA2_BACCE    36 KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 257
               SCOP domains d2bfkb_ B: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains 2bfkB00 B:32-291 Metallo-beta  -lactamase, chain A                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.....eeeeeee..eeeeeeeee.--.eeeeeeeeeee..eeeee....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eee.hhhhhhhhhhh...........eeeeee..eeeeee...........eee.....eeeeehhh..............hhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------BETA_LACTAMASE_B_1  --------------------------------------------------------BETA_LACTAMAS-------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bfk B  32 KTVIKNETGTISISQLNKNVWVHTELGSF--EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADCIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 291
                                    41   ||   52        |- ||     73        83        93      |104  ||   115       125     ||136       146   ||  172       182       192       202  || ||218       228       238       248       258      |279       289  
                                        45|            61 64|                               100|  107|                   131|              150|                                   205| ||                                               265|              
                                         47                66                                102   109                    133               167                                    209 ||                                                277              
                                                                                                                                                                                     211|                                                                 
                                                                                                                                                                                      215

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A,B (BLA2_BACCE | P04190)

molecular function
	GO:0008800	beta-lactamase activity	Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0017001	antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Cis Peptide Bonds
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	2bfk
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	BLA2_BACCE \| P04190
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1bc2	ZN-DEPENDENT METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
1bmc	STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
1bvt	METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9
1dxk	METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9 C168S MUTANT
1mqo	METALLO-BETA-LACTAMASE BCII CD SUBSTITUTED FROM BACILLUS CEREUS AT 1.35 ANGSTROMS RESOLUTION
2bc2	METALLO BETA-LACTAMASE II FROM BACILLUS CEREUS 569/H/9 AT PH 6.0, TRIGONAL CRYSTAL FORM
2bfl	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH5 USING 20MM ZNSO4 IN BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT.
2bfz	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20MM ZNSO4 IN BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
2bg2	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20MM ZNSO4 IN THE BUFFER. 1MM DTT AND 1MM TCEP-HCL WERE USED AS REDUCING AGENTS. CYS221 IS REDUCED.
2bg6	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH5 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
2bg7	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
2bg8	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH4.5 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT AND 1MM TCEP-HCL WERE USED AS REDUCING AGENTS.
2bga	BACILLUS CEREUS METALLO-BETA-LACTAMASE (BCII ) ARG (121) CYS MUTANT. SOLVED AT PH7 USING 20 MICROMOLAR ZNSO4 IN THE BUFFER. 1MM DTT WAS USED AS A REDUCING AGENT. CYS221 IS OXIDIZED.
3bc2	METALLO BETA-LACTAMASE II FROM BACILLUS CEREUS 569/H/9 AT PH 6.0, MONOCLINIC CRYSTAL FORM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 25)

Sites (25, 25)