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(-) Description

Title :  CRYSTAL STRUCTURE OF THE EIF4A-PDCD4 COMPLEX
 
Authors :  Y. Cho, J. H. Chang, S. Y. Sohn
Date :  13 Oct 08  (Deposition) - 24 Feb 09  (Release) - 17 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Protein-Protein Complex, Atp-Binding, Helicase, Hydrolase, Initiation Factor, Nucleotide-Binding, Protein Biosynthesis, Rna-Binding, Anti-Oncogene, Apoptosis, Cell Cycle, Cytoplasm, Nucleus, Phosphoprotein, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Chang, Y. H. Cho, S. Y. Sohn, J. M. Choi, A. Kim, Y. C. Kim, S. K. Jang, Y. Cho
Crystal Structure Of The Eif4A-Pdcd4 Complex
Proc. Natl. Acad. Sci. Usa V. 106 3148 2009
PubMed-ID: 19204291  |  Reference-DOI: 10.1073/PNAS.0808275106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EUKARYOTIC INITIATION FACTOR 4A-I
    Chains: A, C, D, F
    EC Number: 3.6.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-406
    Gene: EIF4A1, DDX2A, EIF4A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EIF-4A-I, EIF4A-I, ATP-DEPENDENT RNA HELICASE EIF4A-1
 
Molecule 2 - PROGRAMMED CELL DEATH PROTEIN 4
    Chains: B, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 163-469
    Gene: PDCD4, H731
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUCLEAR ANTIGEN H731-LIKE, NEOPLASTIC TRANSFORMATION INHIBITOR PROTEIN, PROTEIN 197/15A

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 23)

Asymmetric Unit (3, 23)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:218 , GLU A:222 , LYS A:225BINDING SITE FOR RESIDUE EDO A 2
2AC2SOFTWAREALA A:76 , GLN A:77 , SER A:78 , THR A:80 , ASP A:182 , GLU A:183 , ASP A:185 , SER A:213 , ALA A:214BINDING SITE FOR RESIDUE EDO A 3
3AC3SOFTWARESER A:89BINDING SITE FOR RESIDUE ACY A 1
4AC4SOFTWARESER D:89 , GLN D:93BINDING SITE FOR RESIDUE EDO D 1
5AC5SOFTWAREARG D:141 , TYR D:170BINDING SITE FOR RESIDUE ACY D 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZU6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly F:124 -Asp F:125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZU6)

(-) PROSITE Motifs  (3, 10)

Asymmetric Unit (3, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1Q_MOTIFPS51195 DEAD-box RNA helicase Q motif profile.IF4A1_HUMAN32-60
 		  2C:32-60
D:60-60
2MIPS51366 MI domain profile.PDCD4_HUMAN163-284
 
326-449
 		  4B:163-284
E:163-284
B:326-449
E:326-449
3DEAD_ATP_HELICASEPS00039 DEAD-box subfamily ATP-dependent helicases signature.IF4A1_HUMAN180-188
 
 
 		  4A:180-188
C:180-188
D:180-188
F:180-188
Biological Unit 1 (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1Q_MOTIFPS51195 DEAD-box RNA helicase Q motif profile.IF4A1_HUMAN32-60
 		  1C:32-60
-
2MIPS51366 MI domain profile.PDCD4_HUMAN163-284
 
326-449
 		  2B:163-284
-
B:326-449
-
3DEAD_ATP_HELICASEPS00039 DEAD-box subfamily ATP-dependent helicases signature.IF4A1_HUMAN180-188
 
 
 		  2A:180-188
C:180-188
-
-
Biological Unit 2 (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1Q_MOTIFPS51195 DEAD-box RNA helicase Q motif profile.IF4A1_HUMAN32-60
 		  1-
D:60-60
2MIPS51366 MI domain profile.PDCD4_HUMAN163-284
 
326-449
 		  2-
E:163-284
-
E:326-449
3DEAD_ATP_HELICASEPS00039 DEAD-box subfamily ATP-dependent helicases signature.IF4A1_HUMAN180-188
 
 
 		  2-
-
D:180-188
F:180-188

(-) Exons   (18, 53)

Asymmetric Unit (18, 53)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002801541aENSE00001922986chr10:112631565-112631776212PDCD4_HUMAN-00--
1.2ENST000002801542ENSE00002190882chr10:112635724-112635828105PDCD4_HUMAN1-15150--
1.6aENST000002801546aENSE00001380538chr10:112640991-112641293303PDCD4_HUMAN15-1161020--
1.7ENST000002801547ENSE00000995567chr10:112642761-11264285595PDCD4_HUMAN116-147320--
1.8cENST000002801548cENSE00001094657chr10:112645011-112645124114PDCD4_HUMAN148-185382B:163-185
E:163-185		23
23
1.9eENST000002801549eENSE00002200197chr10:112647423-112647644222PDCD4_HUMAN186-259742B:186-259
E:186-259		74
74
1.10ENST0000028015410ENSE00001788034chr10:112649291-11264938898PDCD4_HUMAN260-292332B:260-292
E:260-292		33
33
1.11aENST0000028015411aENSE00001772839chr10:112650314-112650428115PDCD4_HUMAN292-330392B:292-330 (gaps)
E:292-330 (gaps)		39
39
1.12bENST0000028015412bENSE00001599108chr10:112653849-112653956108PDCD4_HUMAN331-366362B:331-366
E:331-366		36
36
1.13ENST0000028015413ENSE00001674744chr10:112654170-112654280111PDCD4_HUMAN367-403372B:367-403
E:367-403		37
37
1.14bENST0000028015414bENSE00001636249chr10:112655706-112655845140PDCD4_HUMAN404-450472B:404-450
E:404-450		47
47
1.15eENST0000028015415eENSE00001840051chr10:112657786-1126597641979PDCD4_HUMAN450-469202B:450-450
E:450-450		1
1
2.1aENST000002938311aENSE00001710114chr17:7476024-7476182159IF4A1_HUMAN1-880--
2.2ENST000002938312ENSE00001631751chr17:7477578-747762649IF4A1_HUMAN8-24172A:19-24
-
D:19-24
-		6
-
6
-
2.3ENST000002938313ENSE00001762686chr17:7477864-7477996133IF4A1_HUMAN25-69453A:25-69 (gaps)
C:25-69 (gaps)
D:25-69 (gaps)
-		45
45
45
-
2.4aENST000002938314aENSE00001726391chr17:7478437-7478576140IF4A1_HUMAN69-115474A:69-115
C:69-115 (gaps)
D:69-115
F:87-115		47
47
47
29
2.5ENST000002938315ENSE00001061690chr17:7479842-7480010169IF4A1_HUMAN116-172574A:116-172
C:116-172 (gaps)
D:116-172
F:116-172 (gaps)		57
57
57
57
2.6ENST000002938316ENSE00001061689chr17:7480374-7480483110IF4A1_HUMAN172-208374A:172-208
C:172-208
D:172-208
F:172-208		37
37
37
37
2.7ENST000002938317ENSE00001061692chr17:7480662-7480805144IF4A1_HUMAN209-256484A:209-256
C:209-256 (gaps)
D:209-256
F:209-256 (gaps)		48
48
48
48
2.8ENST000002938318ENSE00001799518chr17:7480887-7481024138IF4A1_HUMAN257-302464A:257-302
C:257-302
D:257-302 (gaps)
F:257-302 (gaps)		46
46
46
46
2.9ENST000002938319ENSE00001061685chr17:7481145-748123490IF4A1_HUMAN303-332304A:303-332 (gaps)
C:303-332
D:303-332 (gaps)
F:303-332 (gaps)		30
30
30
30
2.10ENST0000029383110ENSE00001061694chr17:7481483-748156280IF4A1_HUMAN333-359274A:333-359
C:333-359
D:333-359
F:333-359		27
27
27
27
2.11ENST0000029383111ENSE00001485271chr17:7481660-7482324665IF4A1_HUMAN359-406484A:359-401 (gaps)
C:359-398 (gaps)
D:359-402 (gaps)
F:359-398 (gaps)		43
40
44
40

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with IF4A1_HUMAN | P60842 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:383
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398   
          IF4A1_HUMAN    19 PEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
               SCOP domains d2zu6a1 A:1                                9-239 Initiation factor 4a                                                                                                                                                        ------d2zu6a2 A:246-401 Initiation factor 4a                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....--------------------------------..........eeee.......hhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhh..eeeehhhhhhhhhh..........eeeeehhhhhhhh.hhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh...eeeee....ee...eeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhh........ee..-------hhhhhhhhhhh...eeeehhhhhh........eeee.......hhhhhhhhee....-.eeeeee.hhhhhhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------Q_MOTIF  PDB: -              ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------DEAD_ATP_--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 2 (1) 2.2   Exon 2.3  PDB: A:25-69 (gaps) UniProt: 25-69 ----------------------------------------------Exon 2.5  PDB: A:116-172 UniProt: 116-172                ------------------------------------Exon 2.7  PDB: A:209-256 UniProt: 209-256       Exon 2.8  PDB: A:257-302 UniProt: 257-302     Exon 2.9  PDB: A:303-332 (gapsExon 2.10  PDB: A:333-359  ------------------------------------------ Transcript 2 (1)
           Transcript 2 (2) --------------------------------------------------Exon 2.4a  PDB: A:69-115 UniProt: 69-115       --------------------------------------------------------Exon 2.6  PDB: A:172-208             ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.11  PDB: A:359-401 (gaps)            Transcript 2 (2)
                 2zu6 A  19 MEGVIESNWNE--------------------------------AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH-------RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG-KGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
                                    28|        -         -         -   |    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298    |    -  |    318       328       338       348       358        |-|      378       388       398   
                                     29                               62                                                                                                                                                                                                                                              303     311                                                     367 |                                
                                                                                                                                                                                                                                                                                                                                                                                        369                                


Chain B from PDB  Type:PROTEIN  Length:284
 aligned with PDCD4_HUMAN | Q53EL6 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:288
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442        
          PDCD4_HUMAN   163 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 450
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhh..----............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE MI  PDB: B:163-284 UniProt: 163-284                                                                                       -----------------------------------------MI  PDB: B:326-449 UniProt: 326-449                                                                                         - PROSITE
           Transcript 1 (1) Exon 1.8c [INCOMPLETE] Exon 1.9e  PDB: B:186-259 UniProt: 186-259                                Exon 1.10  PDB: B:260-292        --------------------------------------Exon 1.12b  PDB: B:331-366          Exon 1.13  PDB: B:367-403            Exon 1.14b  PDB: B:404-450 UniProt: 404-450     Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------Exon 1.11a  PDB: B:292-330 (gaps)      -----------------------------------------------------------------------------------------------------------------------1 Transcript 1 (2)
                 2zu6 B 163 AFEKTLTPIIQEYFEHGDTNEVAEmLRDLNLGEmKSGVPVLAVSLALEGKASHREmTSKLLSDLCGTVmSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSmSK----KDSVWGSGGGQQSVNHLVKEIDmLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIImVLESTGESTFKmILDLLKSLWKSSTITVDQmKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 450
                                   172       182    |  192   |   202       212     | 222       232       242       252       262       272       282       292       302 | |   312       322       332|      342       352       362       372       382       392       402       412       422       432       442        
                                                  187-MSE  196-MSE               218-MSE      231-MSE                                                                  304-MSE311                   333-MSE                              370-MSE     382-MSE            401-MSE                                             
                                                                                                                                                                         306                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:351
 aligned with IF4A1_HUMAN | P60842 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:374
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
          IF4A1_HUMAN    25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 398
               SCOP domains d2zu6c1 C:25-239 Initiati    on factor 4a                                                                                                                                                                                    d2zu6c2 C:246-398 Initiation factor 4a                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhh----...hhhhhh.hhhhhh..eeee.....hhhhhhhhhhhhh.....--..eeee..hhhhhhhhhhhhhh..------.ee......hhhhhhhhhhh....eeehhhhhhhhhhh.........eeee.hhhhhhhh.hhhhhhhhhh......eeeeee...hhhhhhhhhhhh...eeee....------.eeeeee....hhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhh......eee...hhhhh......eeee.....hhhhhhhhhh-----....eeeeee...hhhhh.hhhhhh....ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------Q_MOTIF  PDB: C:32-60        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------DEAD_ATP_------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 2 (1) Exon 2.3  PDB: C:25-69 (gaps) UniProt: 25-69 ----------------------------------------------Exon 2.5  PDB: C:116-172 (gaps) UniProt: 116-172         ------------------------------------Exon 2.7  PDB: C:209-256 (gaps) UniProt: 209-256Exon 2.8  PDB: C:257-302 UniProt: 257-302     Exon 2.9  PDB: C:303-332      Exon 2.10  PDB: C:333-359  --------------------------------------- Transcript 2 (1)
           Transcript 2 (2) --------------------------------------------Exon 2.4a  PDB: C:69-115 (gaps) UniProt: 69-115--------------------------------------------------------Exon 2.6  PDB: C:172-208             ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.11  PDB: C:359-398 (gaps)         Transcript 2 (2)
                 2zu6 C  25 SNWNEIVDSFDDMNLSESLLRGIYA----KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--TQALVLAPTRELAQQIQKVVMALG------CHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE------IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG-----GRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 398
                                    34        44    |   54        64        74        84        94   |  |104       114       124      |134       144       154       164       174       184       194       204       214       224       234    |    - |     254       264       274       284       294       304       314       324       334       344       354      |  -  |    374       384       394    
                                                   49   54                                          98  |                    124    131                                                                                                         239    246                                                                                                                361   367                               
                                                                                                      101                                                                                                                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:345
 aligned with IF4A1_HUMAN | P60842 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:384
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398    
          IF4A1_HUMAN    19 PEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNV 402
               SCOP domains d2zu6d1 D:19-                            239 Initiation factor 4a                                                                                                                                                            ------d2zu6d2 D:246-402 Initiatio n factor 4a                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee......----------------------------............eeee.......hhhhhhhhhh..........eeee..hhhhhhhhhhhhhhh.......eee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhh.........eeeeehhhhhhhh.hhhhhhhhhhh.....eeeeee...hhhhhhhhhhhh...eeeee....ee...eeeeee...hhhhhhhhhhhhhhhh..-..eee..hhhhhhhhhhhhhh.....ee...------.............-.eeehhhhhhh.......eeee.......hhhhhhhhee..---.eeeeee....hhhhhhhhhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------Q_MOTIF  PDB: D:60-60        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------DEAD_ATP_---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 2 (1) 2.2   Exon 2.3  PDB: D:25-69 (gaps) UniProt: 25-69 ----------------------------------------------Exon 2.5  PDB: D:116-172 UniProt: 116-172                ------------------------------------Exon 2.7  PDB: D:209-256 UniProt: 209-256       Exon 2.8  PDB: D:257-302 (gaps)               Exon 2.9  PDB: D:303-332 (gapsExon 2.10  PDB: D:333-359  ------------------------------------------- Transcript 2 (1)
           Transcript 2 (2) --------------------------------------------------Exon 2.4a  PDB: D:69-115 UniProt: 69-115       --------------------------------------------------------Exon 2.6  PDB: D:172-208             ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.11  PDB: D:359-402 (gaps)             Transcript 2 (2)
                 2zu6 D  19 MEGVIESNWNEIV----------------------------QRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI-QAVIFINTRRKVDWLTEKMHARDFTVSAMHG------RDVIMREFRSGSS-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR---KGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNV 402
                                    28  |      -         -         - |      68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268   | | 278       288       298     |   -  |    318    | |328       338       348       358      |  -|      378       388       398    
                                       31                           60                                                                                                                                                                                                                 272 |                           304    311         323 |                                     365 369                                 
                                                                                                                                                                                                                                                                                         274                                                325                                                                             


Chain E from PDB  Type:PROTEIN  Length:282
 aligned with PDCD4_HUMAN | Q53EL6 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:288
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442        
          PDCD4_HUMAN   163 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 450
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------MA3-2zu6E01 E:327-440                                                                                             ---------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------MA3-2zu6E02 E:327-440                                                                                             ---------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------MA3-2zu6E03 E:327-440                                                                                             ---------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------MA3-2zu6E04 E:327-440                                                                                             ---------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhh.....hhhhhhhhhhhhhhhhhh.------..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE MI  PDB: E:163-284 UniProt: 163-284                                                                                       -----------------------------------------MI  PDB: E:326-449 UniProt: 326-449                                                                                         - PROSITE
           Transcript 1 (1) Exon 1.8c [INCOMPLETE] Exon 1.9e  PDB: E:186-259 UniProt: 186-259                                Exon 1.10  PDB: E:260-292        --------------------------------------Exon 1.12b  PDB: E:331-366          Exon 1.13  PDB: E:367-403            Exon 1.14b  PDB: E:404-450 UniProt: 404-450     Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------Exon 1.11a  PDB: E:292-330 (gaps)      -----------------------------------------------------------------------------------------------------------------------1 Transcript 1 (2)
                 2zu6 E 163 AFEKTLTPIIQEYFEHGDTNEVAEmLRDLNLGEmKSGVPVLAVSLALEGKASHREmTSKLLSDLCGTVmSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSmSK------SVWGSGGGQQSVNHLVKEIDmLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIImVLESTGESTFKmILDLLKSLWKSSTITVDQmKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 450
                                   172       182    |  192   |   202       212     | 222       232       242       252       262       272       282       292       302 | |     -|      322       332|      342       352       362       372       382       392       402       412       422       432       442        
                                                  187-MSE  196-MSE               218-MSE      231-MSE                                                                  304-MSE  313                 333-MSE                              370-MSE     382-MSE            401-MSE                                             
                                                                                                                                                                         306                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:271
 aligned with IF4A1_HUMAN | P60842 from UniProtKB/Swiss-Prot  Length:406

    Alignment length:312
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  
          IF4A1_HUMAN    87 AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 398
               SCOP domains d2zu6f2 F:87-231 Initiation factor 4a                                                                                                                         d2zu6f1 F  :245-398 Initi at ion factor 4a                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) DEAD-2zu6F01 F:87-223                                                                                                                    --------             ---------  -------------- -- ----------------Helicase_C-2zu    6F05 F:290-3 60                                               ------------   --------- ---- Pfam domains (1)
           Pfam domains (2) DEAD-2zu6F02 F:87-223                                                                                                                    --------             ---------  -------------- -- ----------------Helicase_C-2zu    6F06 F:290-3 60                                               ------------   --------- ---- Pfam domains (2)
           Pfam domains (3) DEAD-2zu6F03 F:87-223                                                                                                                    --------             ---------  -------------- -- ----------------Helicase_C-2zu    6F07 F:290-3 60                                               ------------   --------- ---- Pfam domains (3)
           Pfam domains (4) DEAD-2zu6F04 F:87-223                                                                                                                    --------             ---------  -------------- -- ----------------Helicase_C-2zu    6F08 F:290-3 60                                               ------------   --------- ---- Pfam domains (4)
         Sec.struct. author ................eeee..hhhhhhhhhhhhhh...-----.........hhhhhhhhhh.....eeehhhhhhhhhhh.........eeee.hhhhhhh..hhhhhhhhhh........-......hhhhhhhhhhhh...-------------..eeeeee.--.hhhhhhhhhhh..-..-..eee..hhhhhhhhhhhhhh.....eee.----......hhhhhh-.....eee.hhhhh.........eee.....hhhhhhhhh---------.eeeeee.....---.........-.ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------DEAD_ATP_------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 2 (1) -----------------------------Exon 2.5  PDB: F:116-172 (gaps) UniProt: 116-172         ------------------------------------Exon 2.7  PDB: F:209-256 (gaps) UniProt: 209-256Exon 2.8  PDB: F:257-302 (gaps)               Exon 2.9  PDB: F:303-332 (gapsExon 2.10  PDB: F:333-359  --------------------------------------- Transcript 2 (1)
           Transcript 2 (2) Exon 2.4a  PDB: F:87-115     --------------------------------------------------------Exon 2.6  PDB: F:172-208             ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.11  PDB: F:359-398 (gaps)         Transcript 2 (2)
                 2zu6 F  87 AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-----CHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV-LLSATMPSDVLEVTKKFMRDP-------------GIRQFYINV--EEWKLDTLCDLYET-TI-QAVIFINTRRKVDWLTEKMHARDFTVSAMH----QKERDVIMREFR-GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI---------GVAINMVTEEDK---RDIETFYNT-IEEM 398
                                    96       106       116        |-    |  136       146       156       166       176       186       196       206  | |  216       226    |    -       246      |256       266  | || 276       286       296      |  - |     316  | |  326       336       346       356   |     -   |   376    |  386      |396  
                                                                125   131                                                                           209 |                 231           245     253  |          269 || |                          303  308        319 |                                    360       370        381 385     393 |   
                                                                                                                                                      211                                          256            271| |                                            321                                                                       395   
                                                                                                                                                                                                                   272 |                                                                                                                            
                                                                                                                                                                                                                     274
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZU6)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: TPR (230)
(-)
Family: MA3 (5)
(-)
Homo sapiens (Human) (5)
3aMA3-2zu6E01E:327-440
3bMA3-2zu6E02E:327-440
3cMA3-2zu6E03E:327-440
3dMA3-2zu6E04E:327-440

(-) Gene Ontology  (38, 43)

Asymmetric Unit(hide GO term definitions)
Chain A,C,D,F   (IF4A1_HUMAN | P60842)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004004    ATP-dependent RNA helicase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000339    RNA cap binding    Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
    GO:0003725    double-stranded RNA binding    Interacting selectively and non-covalently with double-stranded RNA.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0003729    mRNA binding    Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008135    translation factor activity, RNA binding    Functions during translation by interacting selectively and non-covalently with RNA during polypeptide synthesis at the ribosome.
    GO:0003743    translation initiation factor activity    Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
biological process
    GO:0010501    RNA secondary structure unwinding    The process in which a secondary structure of RNA are broken or 'melted'.
    GO:0031100    animal organ regeneration    The regrowth of a lost or destroyed animal organ.
    GO:0000289    nuclear-transcribed mRNA poly(A) tail shortening    Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0006446    regulation of translational initiation    Any process that modulates the frequency, rate or extent of translational initiation.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006413    translational initiation    The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016281    eukaryotic translation initiation factor 4F complex    The eukaryotic translation initiation factor 4F complex is composed of eIF4E, eIF4A and eIF4G; it is involved in the recognition of the mRNA cap, ATP-dependent unwinding of the 5'-terminal secondary structure and recruitment of the mRNA to the ribosome.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,E   (PDCD4_HUMAN | Q53EL6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0007569    cell aging    An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469).
    GO:0043508    negative regulation of JUN kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of JUN kinase activity.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0045786    negative regulation of cell cycle    Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle.
    GO:1904761    negative regulation of myofibroblast differentiation    Any process that stops, prevents or reduces the frequency, rate or extent of myofibroblast differentiation.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0034393    positive regulation of smooth muscle cell apoptotic process    Any process that activates or increases the frequency, rate, or extent of smooth muscle cell apoptotic process.
    GO:0051246    regulation of protein metabolic process    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4A1_HUMAN | P60842: 2g9n 3eiq
        PDCD4_HUMAN | Q53EL6: 2ggf 2kzt 2rg8 3eij

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2ZU6)