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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE EIF4A-PDCD4 COMPLEX
Keywords PROTEIN-PROTEIN COMPLEX, ATP-BINDING, HELICASE, HYDROLASE, INITIATION FACTOR, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS RNA-BINDING, ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, CYTOPLASM, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2ZU6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EUKARYOTIC INITIATION FACTOR 4A-I  A 343 2743 0
2  Protein   PROGRAMMED CELL DEATH PROTEIN 4  B 284 2146 72
3  Protein   EUKARYOTIC INITIATION FACTOR 4A-I  C 351 2819 0
4  Protein   EUKARYOTIC INITIATION FACTOR 4A-I  D 345 2756 0
5  Protein   PROGRAMMED CELL DEATH PROTEIN 4  E 282 2129 72
6  Protein   EUKARYOTIC INITIATION FACTOR 4A-I  F 271 2196 0
7  Ligand   EUKARYOTIC INITIATION FACTOR 4A-I  A 3 0 12
8  Ligand   EUKARYOTIC INITIATION FACTOR 4A-I  D 2 0 8
9 Water     33 0 33
total       1914 14789 197
Proteins
Unit 1 MET19 GLU20 GLY21 VAL22 ILE23 GLU24 SER25 ASN26 TRP27 ASN28 GLU29 ALA62 ILE63 LEU64 PRO65 CYS66 ILE67 LYS68 GLY69 TYR70 ASP71 VAL72 ILE73 ALA74 GLN75 ALA76 GLN77 SER78 GLY79 THR80 GLY81 LYS82 THR83 ALA84 THR85 PHE86 ALA87 ILE88 SER89 ILE90 LEU91 GLN92 GLN93 ILE94 GLU95 LEU96 ASP97 LEU98 LYS99 ALA100 THR101 GLN102 ALA103 LEU104 VAL105 LEU106 ALA107 PRO108 THR109 ARG110 GLU111 LEU112 ALA113 GLN114 GLN115 ILE116 GLN117 LYS118 VAL119 VAL120 MET121 ALA122 LEU123 GLY124 ASP125 TYR126 MET127 GLY128 ALA129 SER130 CYS131 HIS132 ALA133 CYS134 ILE135 GLY136 GLY137 THR138 ASN139 VAL140 ARG141 ALA142 GLU143 VAL144 GLN145 LYS146 LEU147 GLN148 MET149 GLU150 ALA151 PRO152 HIS153 ILE154 ILE155 VAL156 GLY157 THR158 PRO159 GLY160 ARG161 VAL162 PHE163 ASP164 MET165 LEU166 ASN167 ARG168 ARG169 TYR170 LEU171 SER172 PRO173 LYS174 TYR175 ILE176 LYS177 MET178 PHE179 VAL180 LEU181 ASP182 GLU183 ALA184 ASP185 GLU186 MET187 LEU188 SER189 ARG190 GLY191 PHE192 LYS193 ASP194 GLN195 ILE196 TYR197 ASP198 ILE199 PHE200 GLN201 LYS202 LEU203 ASN204 SER205 ASN206 THR207 GLN208 VAL209 VAL210 LEU211 LEU212 SER213 ALA214 THR215 MET216 PRO217 SER218 ASP219 VAL220 LEU221 GLU222 VAL223 THR224 LYS225 LYS226 PHE227 MET228 ARG229 ASP230 PRO231 ILE232 ARG233 ILE234 LEU235 VAL236 LYS237 LYS238 GLU239 GLU240 LEU241 THR242 LEU243 GLU244 GLY245 ILE246 ARG247 GLN248 PHE249 TYR250 ILE251 ASN252 VAL253 GLU254 ARG255 GLU256 GLU257 TRP258 LYS259 LEU260 ASP261 THR262 LEU263 CYS264 ASP265 LEU266 TYR267 GLU268 THR269 LEU270 THR271 ILE272 THR273 GLN274 ALA275 VAL276 ILE277 PHE278 ILE279 ASN280 THR281 ARG282 ARG283 LYS284 VAL285 ASP286 TRP287 LEU288 THR289 GLU290 LYS291 MET292 HIS293 ALA294 ARG295 ASP296 PHE297 THR298 VAL299 SER300 ALA301 MET302 HIS303 ARG311 ASP312 VAL313 ILE314 MET315 ARG316 GLU317 PHE318 ARG319 SER320 GLY321 SER322 SER323 ARG324 VAL325 LEU326 ILE327 THR328 THR329 ASP330 LEU331 LEU332 ALA333 ARG334 GLY335 ILE336 ASP337 VAL338 GLN339 GLN340 VAL341 SER342 LEU343 VAL344 ILE345 ASN346 TYR347 ASP348 LEU349 PRO350 THR351 ASN352 ARG353 GLU354 ASN355 TYR356 ILE357 HIS358 ARG359 ILE360 GLY361 ARG362 GLY363 GLY364 ARG365 PHE366 GLY367 LYS369 GLY370 VAL371 ALA372 ILE373 ASN374 MET375 VAL376 THR377 GLU378 GLU379 ASP380 LYS381 ARG382 THR383 LEU384 ARG385 ASP386 ILE387 GLU388 THR389 PHE390 TYR391 ASN392 THR393 SER394 ILE395 GLU396 GLU397 MET398 PRO399 LEU400 ASN401
Unit 2 ALA163 PHE164 GLU165 LYS166 THR167 LEU168 THR169 PRO170 ILE171 ILE172 GLN173 GLU174 TYR175 PHE176 GLU177 HIS178 GLY179 ASP180 THR181 ASN182 GLU183 VAL184 ALA185 GLU186 MSE187 LEU188 ARG189 ASP190 LEU191 ASN192 LEU193 GLY194 GLU195 MSE196 LYS197 SER198 GLY199 VAL200 PRO201 VAL202 LEU203 ALA204 VAL205 SER206 LEU207 ALA208 LEU209 GLU210 GLY211 LYS212 ALA213 SER214 HIS215 ARG216 GLU217 MSE218 THR219 SER220 LYS221 LEU222 LEU223 SER224 ASP225 LEU226 CYS227 GLY228 THR229 VAL230 MSE231 SER232 THR233 THR234 ASP235 VAL236 GLU237 LYS238 SER239 PHE240 ASP241 LYS242 LEU243 LEU244 LYS245 ASP246 LEU247 PRO248 GLU249 LEU250 ALA251 LEU252 ASP253 THR254 PRO255 ARG256 ALA257 PRO258 GLN259 LEU260 VAL261 GLY262 GLN263 PHE264 ILE265 ALA266 ARG267 ALA268 VAL269 GLY270 ASP271 GLY272 ILE273 LEU274 CYS275 ASN276 THR277 TYR278 ILE279 ASP280 SER281 TYR282 LYS283 GLY284 THR285 VAL286 ASP287 CYS288 VAL289 GLN290 ALA291 ARG292 ALA293 ALA294 LEU295 ASP296 LYS297 ALA298 THR299 VAL300 LEU301 LEU302 SER303 MSE304 SER305 LYS306 LYS311 ASP312 SER313 VAL314 TRP315 GLY316 SER317 GLY318 GLY319 GLY320 GLN321 GLN322 SER323 VAL324 ASN325 HIS326 LEU327 VAL328 LYS329 GLU330 ILE331 ASP332 MSE333 LEU334 LEU335 LYS336 GLU337 TYR338 LEU339 LEU340 SER341 GLY342 ASP343 ILE344 SER345 GLU346 ALA347 GLU348 HIS349 CYS350 LEU351 LYS352 GLU353 LEU354 GLU355 VAL356 PRO357 HIS358 PHE359 HIS360 HIS361 GLU362 LEU363 VAL364 TYR365 GLU366 ALA367 ILE368 ILE369 MSE370 VAL371 LEU372 GLU373 SER374 THR375 GLY376 GLU377 SER378 THR379 PHE380 LYS381 MSE382 ILE383 LEU384 ASP385 LEU386 LEU387 LYS388 SER389 LEU390 TRP391 LYS392 SER393 SER394 THR395 ILE396 THR397 VAL398 ASP399 GLN400 MSE401 LYS402 ARG403 GLY404 TYR405 GLU406 ARG407 ILE408 TYR409 ASN410 GLU411 ILE412 PRO413 ASP414 ILE415 ASN416 LEU417 ASP418 VAL419 PRO420 HIS421 SER422 TYR423 SER424 VAL425 LEU426 GLU427 ARG428 PHE429 VAL430 GLU431 GLU432 CYS433 PHE434 GLN435 ALA436 GLY437 ILE438 ILE439 SER440 LYS441 GLN442 LEU443 ARG444 ASP445 LEU446 CYS447 PRO448 SER449 ARG450
Unit 3 SER25 ASN26 TRP27 ASN28 GLU29 ILE30 VAL31 ASP32 SER33 PHE34 ASP35 ASP36 MET37 ASN38 LEU39 SER40 GLU41 SER42 LEU43 LEU44 ARG45 GLY46 ILE47 TYR48 ALA49 LYS54 PRO55 SER56 ALA57 ILE58 GLN59 GLN60 ARG61 ALA62 ILE63 LEU64 PRO65 CYS66 ILE67 LYS68 GLY69 TYR70 ASP71 VAL72 ILE73 ALA74 GLN75 ALA76 GLN77 SER78 GLY79 THR80 GLY81 LYS82 THR83 ALA84 THR85 PHE86 ALA87 ILE88 SER89 ILE90 LEU91 GLN92 GLN93 ILE94 GLU95 LEU96 ASP97 LEU98 THR101 GLN102 ALA103 LEU104 VAL105 LEU106 ALA107 PRO108 THR109 ARG110 GLU111 LEU112 ALA113 GLN114 GLN115 ILE116 GLN117 LYS118 VAL119 VAL120 MET121 ALA122 LEU123 GLY124 CYS131 HIS132 ALA133 CYS134 ILE135 GLY136 GLY137 THR138 ASN139 VAL140 ARG141 ALA142 GLU143 VAL144 GLN145 LYS146 LEU147 GLN148 MET149 GLU150 ALA151 PRO152 HIS153 ILE154 ILE155 VAL156 GLY157 THR158 PRO159 GLY160 ARG161 VAL162 PHE163 ASP164 MET165 LEU166 ASN167 ARG168 ARG169 TYR170 LEU171 SER172 PRO173 LYS174 TYR175 ILE176 LYS177 MET178 PHE179 VAL180 LEU181 ASP182 GLU183 ALA184 ASP185 GLU186 MET187 LEU188 SER189 ARG190 GLY191 PHE192 LYS193 ASP194 GLN195 ILE196 TYR197 ASP198 ILE199 PHE200 GLN201 LYS202 LEU203 ASN204 SER205 ASN206 THR207 GLN208 VAL209 VAL210 LEU211 LEU212 SER213 ALA214 THR215 MET216 PRO217 SER218 ASP219 VAL220 LEU221 GLU222 VAL223 THR224 LYS225 LYS226 PHE227 MET228 ARG229 ASP230 PRO231 ILE232 ARG233 ILE234 LEU235 VAL236 LYS237 LYS238 GLU239 ILE246 ARG247 GLN248 PHE249 TYR250 ILE251 ASN252 VAL253 GLU254 ARG255 GLU256 GLU257 TRP258 LYS259 LEU260 ASP261 THR262 LEU263 CYS264 ASP265 LEU266 TYR267 GLU268 THR269 LEU270 THR271 ILE272 THR273 GLN274 ALA275 VAL276 ILE277 PHE278 ILE279 ASN280 THR281 ARG282 ARG283 LYS284 VAL285 ASP286 TRP287 LEU288 THR289 GLU290 LYS291 MET292 HIS293 ALA294 ARG295 ASP296 PHE297 THR298 VAL299 SER300 ALA301 MET302 HIS303 GLY304 ASP305 MET306 ASP307 GLN308 LYS309 GLU310 ARG311 ASP312 VAL313 ILE314 MET315 ARG316 GLU317 PHE318 ARG319 SER320 GLY321 SER322 SER323 ARG324 VAL325 LEU326 ILE327 THR328 THR329 ASP330 LEU331 LEU332 ALA333 ARG334 GLY335 ILE336 ASP337 VAL338 GLN339 GLN340 VAL341 SER342 LEU343 VAL344 ILE345 ASN346 TYR347 ASP348 LEU349 PRO350 THR351 ASN352 ARG353 GLU354 ASN355 TYR356 ILE357 HIS358 ARG359 ILE360 GLY361 GLY367 ARG368 LYS369 GLY370 VAL371 ALA372 ILE373 ASN374 MET375 VAL376 THR377 GLU378 GLU379 ASP380 LYS381 ARG382 THR383 LEU384 ARG385 ASP386 ILE387 GLU388 THR389 PHE390 TYR391 ASN392 THR393 SER394 ILE395 GLU396 GLU397 MET398
Unit 4 MET19 GLU20 GLY21 VAL22 ILE23 GLU24 SER25 ASN26 TRP27 ASN28 GLU29 ILE30 VAL31 GLN60 ARG61 ALA62 ILE63 LEU64 PRO65 CYS66 ILE67 LYS68 GLY69 TYR70 ASP71 VAL72 ILE73 ALA74 GLN75 ALA76 GLN77 SER78 GLY79 THR80 GLY81 LYS82 THR83 ALA84 THR85 PHE86 ALA87 ILE88 SER89 ILE90 LEU91 GLN92 GLN93 ILE94 GLU95 LEU96 ASP97 LEU98 LYS99 ALA100 THR101 GLN102 ALA103 LEU104 VAL105 LEU106 ALA107 PRO108 THR109 ARG110 GLU111 LEU112 ALA113 GLN114 GLN115 ILE116 GLN117 LYS118 VAL119 VAL120 MET121 ALA122 LEU123 GLY124 ASP125 TYR126 MET127 GLY128 ALA129 SER130 CYS131 HIS132 ALA133 CYS134 ILE135 GLY136 GLY137 THR138 ASN139 VAL140 ARG141 ALA142 GLU143 VAL144 GLN145 LYS146 LEU147 GLN148 MET149 GLU150 ALA151 PRO152 HIS153 ILE154 ILE155 VAL156 GLY157 THR158 PRO159 GLY160 ARG161 VAL162 PHE163 ASP164 MET165 LEU166 ASN167 ARG168 ARG169 TYR170 LEU171 SER172 PRO173 LYS174 TYR175 ILE176 LYS177 MET178 PHE179 VAL180 LEU181 ASP182 GLU183 ALA184 ASP185 GLU186 MET187 LEU188 SER189 ARG190 GLY191 PHE192 LYS193 ASP194 GLN195 ILE196 TYR197 ASP198 ILE199 PHE200 GLN201 LYS202 LEU203 ASN204 SER205 ASN206 THR207 GLN208 VAL209 VAL210 LEU211 LEU212 SER213 ALA214 THR215 MET216 PRO217 SER218 ASP219 VAL220 LEU221 GLU222 VAL223 THR224 LYS225 LYS226 PHE227 MET228 ARG229 ASP230 PRO231 ILE232 ARG233 ILE234 LEU235 VAL236 LYS237 LYS238 GLU239 GLU240 LEU241 THR242 LEU243 GLU244 GLY245 ILE246 ARG247 GLN248 PHE249 TYR250 ILE251 ASN252 VAL253 GLU254 ARG255 GLU256 GLU257 TRP258 LYS259 LEU260 ASP261 THR262 LEU263 CYS264 ASP265 LEU266 TYR267 GLU268 THR269 LEU270 THR271 ILE272 GLN274 ALA275 VAL276 ILE277 PHE278 ILE279 ASN280 THR281 ARG282 ARG283 LYS284 VAL285 ASP286 TRP287 LEU288 THR289 GLU290 LYS291 MET292 HIS293 ALA294 ARG295 ASP296 PHE297 THR298 VAL299 SER300 ALA301 MET302 HIS303 GLY304 ARG311 ASP312 VAL313 ILE314 MET315 ARG316 GLU317 PHE318 ARG319 SER320 GLY321 SER322 SER323 VAL325 LEU326 ILE327 THR328 THR329 ASP330 LEU331 LEU332 ALA333 ARG334 GLY335 ILE336 ASP337 VAL338 GLN339 GLN340 VAL341 SER342 LEU343 VAL344 ILE345 ASN346 TYR347 ASP348 LEU349 PRO350 THR351 ASN352 ARG353 GLU354 ASN355 TYR356 ILE357 HIS358 ARG359 ILE360 GLY361 ARG362 GLY363 GLY364 ARG365 LYS369 GLY370 VAL371 ALA372 ILE373 ASN374 MET375 VAL376 THR377 GLU378 GLU379 ASP380 LYS381 ARG382 THR383 LEU384 ARG385 ASP386 ILE387 GLU388 THR389 PHE390 TYR391 ASN392 THR393 SER394 ILE395 GLU396 GLU397 MET398 PRO399 LEU400 ASN401 VAL402
Unit 5 ALA163 PHE164 GLU165 LYS166 THR167 LEU168 THR169 PRO170 ILE171 ILE172 GLN173 GLU174 TYR175 PHE176 GLU177 HIS178 GLY179 ASP180 THR181 ASN182 GLU183 VAL184 ALA185 GLU186 MSE187 LEU188 ARG189 ASP190 LEU191 ASN192 LEU193 GLY194 GLU195 MSE196 LYS197 SER198 GLY199 VAL200 PRO201 VAL202 LEU203 ALA204 VAL205 SER206 LEU207 ALA208 LEU209 GLU210 GLY211 LYS212 ALA213 SER214 HIS215 ARG216 GLU217 MSE218 THR219 SER220 LYS221 LEU222 LEU223 SER224 ASP225 LEU226 CYS227 GLY228 THR229 VAL230 MSE231 SER232 THR233 THR234 ASP235 VAL236 GLU237 LYS238 SER239 PHE240 ASP241 LYS242 LEU243 LEU244 LYS245 ASP246 LEU247 PRO248 GLU249 LEU250 ALA251 LEU252 ASP253 THR254 PRO255 ARG256 ALA257 PRO258 GLN259 LEU260 VAL261 GLY262 GLN263 PHE264 ILE265 ALA266 ARG267 ALA268 VAL269 GLY270 ASP271 GLY272 ILE273 LEU274 CYS275 ASN276 THR277 TYR278 ILE279 ASP280 SER281 TYR282 LYS283 GLY284 THR285 VAL286 ASP287 CYS288 VAL289 GLN290 ALA291 ARG292 ALA293 ALA294 LEU295 ASP296 LYS297 ALA298 THR299 VAL300 LEU301 LEU302 SER303 MSE304 SER305 LYS306 SER313 VAL314 TRP315 GLY316 SER317 GLY318 GLY319 GLY320 GLN321 GLN322 SER323 VAL324 ASN325 HIS326 LEU327 VAL328 LYS329 GLU330 ILE331 ASP332 MSE333 LEU334 LEU335 LYS336 GLU337 TYR338 LEU339 LEU340 SER341 GLY342 ASP343 ILE344 SER345 GLU346 ALA347 GLU348 HIS349 CYS350 LEU351 LYS352 GLU353 LEU354 GLU355 VAL356 PRO357 HIS358 PHE359 HIS360 HIS361 GLU362 LEU363 VAL364 TYR365 GLU366 ALA367 ILE368 ILE369 MSE370 VAL371 LEU372 GLU373 SER374 THR375 GLY376 GLU377 SER378 THR379 PHE380 LYS381 MSE382 ILE383 LEU384 ASP385 LEU386 LEU387 LYS388 SER389 LEU390 TRP391 LYS392 SER393 SER394 THR395 ILE396 THR397 VAL398 ASP399 GLN400 MSE401 LYS402 ARG403 GLY404 TYR405 GLU406 ARG407 ILE408 TYR409 ASN410 GLU411 ILE412 PRO413 ASP414 ILE415 ASN416 LEU417 ASP418 VAL419 PRO420 HIS421 SER422 TYR423 SER424 VAL425 LEU426 GLU427 ARG428 PHE429 VAL430 GLU431 GLU432 CYS433 PHE434 GLN435 ALA436 GLY437 ILE438 ILE439 SER440 LYS441 GLN442 LEU443 ARG444 ASP445 LEU446 CYS447 PRO448 SER449 ARG450
Unit 6 ALA87 ILE88 SER89 ILE90 LEU91 GLN92 GLN93 ILE94 GLU95 LEU96 ASP97 LEU98 LYS99 ALA100 THR101 GLN102 ALA103 LEU104 VAL105 LEU106 ALA107 PRO108 THR109 ARG110 GLU111 LEU112 ALA113 GLN114 GLN115 ILE116 GLN117 LYS118 VAL119 VAL120 MET121 ALA122 LEU123 GLY124 ASP125 CYS131 HIS132 ALA133 CYS134 ILE135 GLY136 GLY137 THR138 ASN139 VAL140 ARG141 ALA142 GLU143 VAL144 GLN145 LYS146 LEU147 GLN148 MET149 GLU150 ALA151 PRO152 HIS153 ILE154 ILE155 VAL156 GLY157 THR158 PRO159 GLY160 ARG161 VAL162 PHE163 ASP164 MET165 LEU166 ASN167 ARG168 ARG169 TYR170 LEU171 SER172 PRO173 LYS174 TYR175 ILE176 LYS177 MET178 PHE179 VAL180 LEU181 ASP182 GLU183 ALA184 ASP185 GLU186 MET187 LEU188 SER189 ARG190 GLY191 PHE192 LYS193 ASP194 GLN195 ILE196 TYR197 ASP198 ILE199 PHE200 GLN201 LYS202 LEU203 ASN204 SER205 ASN206 THR207 GLN208 VAL209 LEU211 LEU212 SER213 ALA214 THR215 MET216 PRO217 SER218 ASP219 VAL220 LEU221 GLU222 VAL223 THR224 LYS225 LYS226 PHE227 MET228 ARG229 ASP230 PRO231 GLY245 ILE246 ARG247 GLN248 PHE249 TYR250 ILE251 ASN252 VAL253 GLU256 GLU257 TRP258 LYS259 LEU260 ASP261 THR262 LEU263 CYS264 ASP265 LEU266 TYR267 GLU268 THR269 THR271 ILE272 GLN274 ALA275 VAL276 ILE277 PHE278 ILE279 ASN280 THR281 ARG282 ARG283 LYS284 VAL285 ASP286 TRP287 LEU288 THR289 GLU290 LYS291 MET292 HIS293 ALA294 ARG295 ASP296 PHE297 THR298 VAL299 SER300 ALA301 MET302 HIS303 GLN308 LYS309 GLU310 ARG311 ASP312 VAL313 ILE314 MET315 ARG316 GLU317 PHE318 ARG319 GLY321 SER322 SER323 ARG324 VAL325 LEU326 ILE327 THR328 THR329 ASP330 LEU331 LEU332 ALA333 ARG334 GLY335 ILE336 ASP337 VAL338 GLN339 GLN340 VAL341 SER342 LEU343 VAL344 ILE345 ASN346 TYR347 ASP348 LEU349 PRO350 THR351 ASN352 ARG353 GLU354 ASN355 TYR356 ILE357 HIS358 ARG359 ILE360 GLY370 VAL371 ALA372 ILE373 ASN374 MET375 VAL376 THR377 GLU378 GLU379 ASP380 LYS381 ARG385 ASP386 ILE387 GLU388 THR389 PHE390 TYR391 ASN392 THR393 ILE395 GLU396 GLU397 MET398
Ligands
Unit 7 ACY1 EDO2 EDO3
Unit 8 EDO1 ACY2
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany